RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 RTKN2Q8IZC4 609 aa14.23□□□□□ -0.13
SF3B6-201ENST00000233468 SYNE4Q8N205 404 aa14.23□□□□□ -0.13
SF3B6-201ENST00000233468 HDAC5Q9UQL6 1122 aa14.23□□□□□ -0.13
SF3B6-201ENST00000233468 GRM8O00222 908 aa14.22□□□□□ -0.13
SF3B6-201ENST00000233468 TAF1DQ9H5J8 278 aaPredicted RBP14.22□□□□□ -0.13
SF3B6-201ENST00000233468 COL4A5P29400 1685 aa14.21□□□□□ -0.13
SF3B6-201ENST00000233468 PPEF1O14829 653 aaPredicted RBP14.21□□□□□ -0.13
SF3B6-201ENST00000233468 GRAPQ13588 217 aa14.21□□□□□ -0.13
SF3B6-201ENST00000233468 GRAPLQ8TC17 118 aaPredicted RBP14.21□□□□□ -0.13
SF3B6-201ENST00000233468 FRAT1Q92837 279 aaPredicted RBP14.21□□□□□ -0.13
SF3B6-201ENST00000233468 L3MBTL3Q96JM7 780 aaPredicted RBP14.21□□□□□ -0.13
SF3B6-201ENST00000233468 PLA2G12BQ9BX93 195 aa14.21□□□□□ -0.13
SF3B6-201ENST00000233468 PASKQ96RG2 1323 aa14.2□□□□□ -0.14
SF3B6-201ENST00000233468 ADAMTSL1Q8N6G6 1762 aa14.2□□□□□ -0.14
SF3B6-201ENST00000233468 MS4A1P11836 297 aa14.2□□□□□ -0.14
SF3B6-201ENST00000233468 CTSWP56202 376 aa14.2□□□□□ -0.14
SF3B6-201ENST00000233468 EAPPQ56P03 285 aaPredicted RBP14.2□□□□□ -0.14
SF3B6-201ENST00000233468 ZKSCAN2Q63HK3 967 aa14.2□□□□□ -0.14
SF3B6-201ENST00000233468 ATF7IPQ6VMQ6 1270 aa14.2□□□□□ -0.14
SF3B6-201ENST00000233468 C3orf67Q6ZVT6 689 aa14.2□□□□□ -0.14
SF3B6-201ENST00000233468 YTHDC1Q96MU7 727 aaKnown RBP14.2□□□□□ -0.14
SF3B6-201ENST00000233468 CDC5LQ99459 802 aaKnown RBP14.2□□□□□ -0.14
SF3B6-201ENST00000233468 ABCC4O15439 1325 aa14.19□□□□□ -0.14
SF3B6-201ENST00000233468 SNED1Q8TER0 1413 aa14.19□□□□□ -0.14
SF3B6-201ENST00000233468 BCAR3O75815 825 aa14.19□□□□□ -0.14
SF3B6-201ENST00000233468 ITGBL1O95965 494 aaPredicted RBP14.19□□□□□ -0.14
SF3B6-201ENST00000233468 LDHDQ86WU2 507 aa14.19□□□□□ -0.14
SF3B6-201ENST00000233468 JARID2Q92833 1246 aaPredicted RBP14.19□□□□□ -0.14
SF3B6-201ENST00000233468 LTBP1Q14766 1721 aa14.18□□□□□ -0.14
SF3B6-201ENST00000233468 IQCA1LA6NCM1 817 aa14.18□□□□□ -0.14
SF3B6-201ENST00000233468 FZD9O00144 591 aa14.18□□□□□ -0.14
SF3B6-201ENST00000233468 IARSP41252 1262 aaKnown RBP14.18□□□□□ -0.14
SF3B6-201ENST00000233468 RPS8P62241 208 aaKnown RBP14.18□□□□□ -0.14
SF3B6-201ENST00000233468 SP8Q8IXZ3 490 aa14.18□□□□□ -0.14
SF3B6-201ENST00000233468 FTSJ3Q8IY81 847 aaKnown RBP14.18□□□□□ -0.14
SF3B6-201ENST00000233468 TTLL11Q8NHH1 800 aa14.18□□□□□ -0.14
SF3B6-201ENST00000233468 ATP6V0A2Q9Y487 856 aa14.18□□□□□ -0.14
SF3B6-201ENST00000233468 ANKRD36CQ5JPF3 1778 aa14.17□□□□□ -0.14
SF3B6-201ENST00000233468 TAF1P21675 1872 aa14.17□□□□□ -0.14
SF3B6-201ENST00000233468 CACNA1FO60840 1977 aa14.17□□□□□ -0.14
SF3B6-201ENST00000233468 CASP7P55210 303 aa14.17□□□□□ -0.14
SF3B6-201ENST00000233468 ANKRD18AQ8IVF6 992 aa14.17□□□□□ -0.14
SF3B6-201ENST00000233468 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.17□□□□□ -0.14
SF3B6-201ENST00000233468 SUPT20HQ8NEM7 779 aa14.17□□□□□ -0.14
SF3B6-201ENST00000233468 HACL1Q9UJ83 578 aa14.17□□□□□ -0.14
SF3B6-201ENST00000233468 RCAN3Q9UKA8 241 aa14.17□□□□□ -0.14
SF3B6-201ENST00000233468 CNTNAP1P78357 1384 aa14.17□□□□□ -0.14
SF3B6-201ENST00000233468 UTYO14607 1347 aa14.16□□□□□ -0.14
SF3B6-201ENST00000233468 FOXN1O15353 648 aa14.16□□□□□ -0.14
SF3B6-201ENST00000233468 CSF1RP07333 972 aa14.16□□□□□ -0.14
SF3B6-201ENST00000233468 TRIM27P14373 513 aa14.16□□□□□ -0.14
SF3B6-201ENST00000233468 EPHX2P34913 555 aa14.16□□□□□ -0.14
SF3B6-201ENST00000233468 IGHMBP2P38935 993 aaKnown RBP14.16□□□□□ -0.14
SF3B6-201ENST00000233468 VEGFBP49765 207 aa14.16□□□□□ -0.14
SF3B6-201ENST00000233468 FMR1Q06787 632 aaKnown RBP eCLIP14.16□□□□□ -0.14
SF3B6-201ENST00000233468 MAP1SQ66K74 1059 aaPredicted RBP14.16□□□□□ -0.14
SF3B6-201ENST00000233468 INTS3Q68E01 1043 aaKnown RBP14.16□□□□□ -0.14
SF3B6-201ENST00000233468 PSMD1Q99460 953 aa14.16□□□□□ -0.14
SF3B6-201ENST00000233468 RTL9Q8NET4 1388 aa14.16□□□□□ -0.14
SF3B6-201ENST00000233468 LAMB2P55268 1798 aa14.15□□□□□ -0.14
SF3B6-201ENST00000233468 ANKRD18BA2A2Z9 1011 aa14.15□□□□□ -0.14
SF3B6-201ENST00000233468 GNAI3P08754 354 aa14.15□□□□□ -0.14
SF3B6-201ENST00000233468 UBTFL1P0CB47 393 aaPredicted RBP14.15□□□□□ -0.14
SF3B6-201ENST00000233468 IFIT5Q13325 482 aaKnown RBP14.15□□□□□ -0.14
SF3B6-201ENST00000233468 CCDC57Q2TAC2 916 aa14.15□□□□□ -0.14
SF3B6-201ENST00000233468 DPP8Q6V1X1 898 aaPredicted RBP14.15□□□□□ -0.14
SF3B6-201ENST00000233468 CCDC85AQ96PX6 553 aaPredicted RBP14.15□□□□□ -0.14
SF3B6-201ENST00000233468 VPS33BQ9H267 617 aa14.15□□□□□ -0.14
SF3B6-201ENST00000233468 CHMP3Q9Y3E7 222 aa14.15□□□□□ -0.14
SF3B6-201ENST00000233468 TMEM88BA6NKF7 163 aa14.14□□□□□ -0.15
SF3B6-201ENST00000233468 NBPF7P0C2Y1 421 aaPredicted RBP14.14□□□□□ -0.15
SF3B6-201ENST00000233468 ITGA6P23229 1130 aa14.14□□□□□ -0.15
SF3B6-201ENST00000233468 TAF7LQ5H9L4 462 aa14.14□□□□□ -0.15
SF3B6-201ENST00000233468 DZIP1LQ8IYY4 767 aaKnown RBP14.14□□□□□ -0.15
SF3B6-201ENST00000233468 CNTROBQ8N137 903 aa14.14□□□□□ -0.15
SF3B6-201ENST00000233468 GPC2Q8N158 579 aa14.14□□□□□ -0.15
SF3B6-201ENST00000233468 MPNDQ8N594 471 aa14.14□□□□□ -0.15
SF3B6-201ENST00000233468 CELF1Q92879 486 aaKnown RBP14.14□□□□□ -0.15
SF3B6-201ENST00000233468 MPHOSPH8Q99549 860 aa14.14□□□□□ -0.15
SF3B6-201ENST00000233468 USP44Q9H0E7 712 aa14.14□□□□□ -0.15
SF3B6-201ENST00000233468 GREM2Q9H772 168 aa14.14□□□□□ -0.15
SF3B6-201ENST00000233468 GJA3Q9Y6H8 435 aa14.14□□□□□ -0.15
SF3B6-201ENST00000233468 FOXO4P98177 505 aa14.13□□□□□ -0.15
SF3B6-201ENST00000233468 LMBR1LQ6UX01 489 aa14.13□□□□□ -0.15
SF3B6-201ENST00000233468 TSPYL2Q9H2G4 693 aaPredicted RBP14.13□□□□□ -0.15
SF3B6-201ENST00000233468 SEC31BQ9NQW1 1179 aa14.13□□□□□ -0.15
SF3B6-201ENST00000233468 BSDC1Q9NW68 430 aaPredicted RBP14.13□□□□□ -0.15
SF3B6-201ENST00000233468 EPS15P42566 896 aa14.12□□□□□ -0.15
SF3B6-201ENST00000233468 JDP2Q8WYK2 163 aa14.12□□□□□ -0.15
SF3B6-201ENST00000233468 CLUAP1Q96AJ1 413 aa14.12□□□□□ -0.15
SF3B6-201ENST00000233468 SUCLG2Q96I99 432 aa14.12□□□□□ -0.15
SF3B6-201ENST00000233468 CHMP4BQ9H444 224 aaKnown RBP14.12□□□□□ -0.15
SF3B6-201ENST00000233468 NSFL1CQ9UNZ2 370 aaKnown RBP14.12□□□□□ -0.15
SF3B6-201ENST00000233468 TRPM7Q96QT4 1865 aa14.12□□□□□ -0.15
SF3B6-201ENST00000233468 SCNN1DP51172 638 aa14.11□□□□□ -0.15
SF3B6-201ENST00000233468 FAM161AQ3B820 660 aa14.11□□□□□ -0.15
SF3B6-201ENST00000233468 PNMA8AQ86V59 439 aaPredicted RBP14.11□□□□□ -0.15
SF3B6-201ENST00000233468 EYA3Q99504 573 aa14.11□□□□□ -0.15
SF3B6-201ENST00000233468 RTFDC1Q9BY42 306 aaPredicted RBP14.11□□□□□ -0.15
SF3B6-201ENST00000233468 ANKRD2Q9GZV1 360 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms