RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 OR4K13Q8NH42 304 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 DNAJC9Q8WXX5 260 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 NMD3Q96D46 503 aaKnown RBP15.79■□□□□ 0.12
CLN3-239ENST00000628023 CENPNQ96H22 339 aaPredicted RBP15.79■□□□□ 0.12
CLN3-239ENST00000628023 HS3ST6Q96QI5 342 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 SYT4Q9H2B2 425 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 SEC61A2Q9H9S3 476 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 MOV10Q9HCE1 1003 aaKnown RBP15.79■□□□□ 0.12
CLN3-239ENST00000628023 BAIAP2Q9UQB8 552 aa15.79■□□□□ 0.12
CLN3-239ENST00000628023 ACANP16112 2415 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 IGKV1D-43A0A0B4J1Z2 117 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 ATE1O95260 518 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 HLA-HP01893 362 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 HIST1H1CP16403 213 aaKnown RBP15.78■□□□□ 0.12
CLN3-239ENST00000628023 CDAP32320 146 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 ZNF133P52736 654 aaPredicted RBP15.78■□□□□ 0.12
CLN3-239ENST00000628023 NPRL3Q12980 569 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 SLC35F1Q5T1Q4 408 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 NCMAPQ5T1S8 102 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 DNM1P34Q6PK57 102 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 SLC25A47Q6Q0C1 308 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 SEZ6L2Q6UXD5 910 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 PTCHD4Q6ZW05 846 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 SDR9C7Q8NEX9 313 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 OR52E2Q8NGJ4 325 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 HTRA1Q92743 480 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 KCNS3Q9BQ31 491 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 KCNN2Q9H2S1 579 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 PAPOLBQ9NRJ5 636 aaKnown RBP15.78■□□□□ 0.12
CLN3-239ENST00000628023 VSX1Q9NZR4 365 aaPredicted RBP15.78■□□□□ 0.12
CLN3-239ENST00000628023 RNF115Q9Y4L5 304 aa15.78■□□□□ 0.12
CLN3-239ENST00000628023 HRNRQ86YZ3 2850 aaPredicted RBP15.78■□□□□ 0.12
CLN3-239ENST00000628023 NIPBLQ6KC79 2804 aaeCLIP15.77■□□□□ 0.12
CLN3-239ENST00000628023 SAC3D1A6NKF1 404 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 ANKRD65E5RJM6 399 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 H3BNX3 289 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 BHLHE40O14503 412 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 ABCD4O14678 606 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 SLC16A7O60669 478 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 KHDRBS3O75525 346 aaKnown RBP15.77■□□□□ 0.12
CLN3-239ENST00000628023 UBL3O95164 117 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 RAB36O95755 333 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 NPR2P20594 1047 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 PTAFRP25105 342 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 CDKN2AP42771 156 aaKnown RBP15.77■□□□□ 0.12
CLN3-239ENST00000628023 CENPAP49450 140 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 ADAM8P78325 824 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 PIGFQ07326 219 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.77■□□□□ 0.12
CLN3-239ENST00000628023 SGCAQ16586 387 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 ZNF704Q6ZNC4 412 aaPredicted RBP15.77■□□□□ 0.12
CLN3-239ENST00000628023 SLC16A14Q7RTX9 510 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 MDP1Q86V88 176 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 PIAS4Q8N2W9 510 aaPredicted RBP15.77■□□□□ 0.12
CLN3-239ENST00000628023 LRRC18Q8N456 261 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 NMNAT3Q96T66 252 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 PKP2Q99959 881 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 SH3GL3Q99963 347 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 PLEKHF2Q9H8W4 249 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 S100A14Q9HCY8 104 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 OAZ3Q9UMX2 235 aa15.77■□□□□ 0.12
CLN3-239ENST00000628023 DPRXA6NFQ7 191 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 IFNGP01579 166 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 OSMP13725 252 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 CTLA4P16410 223 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 CD40P25942 277 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 CRABP1P29762 137 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 PTDSS1P48651 473 aaKnown RBP15.76■□□□□ 0.11
CLN3-239ENST00000628023 IDH3GP51553 393 aaPredicted RBP15.76■□□□□ 0.11
CLN3-239ENST00000628023 MRPS34P82930 218 aaKnown RBP15.76■□□□□ 0.11
CLN3-239ENST00000628023 GSG1Q2KHT4 349 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 SLC36A2Q495M3 483 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 NRN1LQ496H8 165 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 ADAM5Q6NVV9 412 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 FAHD1Q6P587 224 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 SKA3Q8IX90 412 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 DEPDC4Q8N2C3 294 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 IQCF1Q8N6M8 205 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 OR4Q3Q8NH05 313 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 POM121Q96HA1 1249 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 SLC38A2Q96QD8 506 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 TEX12Q9BXU0 123 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 RNF121Q9H920 327 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 UBTD1Q9HAC8 227 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 RPRD1BQ9NQG5 326 aaKnown RBP15.76■□□□□ 0.11
CLN3-239ENST00000628023 KRT84Q9NSB2 600 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 REV1Q9UBZ9 1251 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 POU2F3Q9UKI9 436 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 UGT2A1Q9Y4X1 527 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 NAV3Q8IVL0 2385 aa15.76■□□□□ 0.11
CLN3-239ENST00000628023 ZNF503-AS2A6NEH8 195 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 RIIAD1A6NNX1 92 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 TP53P04637 393 aaPredicted RBP15.75■□□□□ 0.11
CLN3-239ENST00000628023 CBR1P16152 277 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 LOXP28300 417 aaPredicted RBP15.75■□□□□ 0.11
CLN3-239ENST00000628023 ARR3P36575 388 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 GIPRP48546 466 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 DAPP51397 102 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 ETFDHQ16134 617 aa15.75■□□□□ 0.11
CLN3-239ENST00000628023 PGGHGQ32M88 737 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms