RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 DUSP18Q8NEJ0 188 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 TMEM234Q8WY98 164 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 MCUBQ9NWR8 336 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 ABRACLQ9P1F3 81 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 KLK11Q9UBX7 282 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 RPH3AQ9Y2J0 694 aaPredicted RBP9.54□□□□□ -0.88
CUX1-221ENST00000622516 PCDHGA9Q9Y5G4 932 aaKnown RBP9.54□□□□□ -0.88
CUX1-221ENST00000622516 CACNG2Q9Y698 323 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 FAM186AA6NE01 2351 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 EXPH5Q8NEV8 1989 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 IGLV1-36A0A0B4J1U3 117 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 VSTM2BA6NLU5 285 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 CENPXA8MT69 81 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 PNLIPP16233 465 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 PTBP1P26599 531 aaKnown RBP eCLIP9.54□□□□□ -0.884e-11■■■■■ 42.8
CUX1-221ENST00000622516 SLC6A1P30531 599 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 LCN1P31025 176 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 SFTPDP35247 375 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 CLDN6P56747 220 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 EIF2B1Q14232 305 aaKnown RBP9.54□□□□□ -0.88
CUX1-221ENST00000622516 FAAP20Q6NZ36 180 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 ZNF248Q8NDW4 579 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 BEST4Q8NFU0 473 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 TSEN15Q8WW01 171 aaKnown RBP9.54□□□□□ -0.88
CUX1-221ENST00000622516 OIT3Q8WWZ8 545 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 MR1Q95460 341 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 SLC25A38Q96DW6 304 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 DEFB126Q9BYW3 111 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 NKIRAS2Q9NYR9 191 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 NPAP1Q9NZP6 1156 aa9.54□□□□□ -0.88
CUX1-221ENST00000622516 ANKUB1A6NFN9 424 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 AIPO00170 330 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 ARSBP15848 533 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 BTF3P20290 206 aaKnown RBP9.53□□□□□ -0.88
CUX1-221ENST00000622516 CLDN20P56880 219 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 EFR3AQ14156 821 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 KRT77Q7Z794 578 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 GLB1L2Q8IW92 636 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 NUBPLQ8TB37 319 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 SYNPRQ8TBG9 265 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 MARVELD1Q9BSK0 173 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 ABHD6Q9BV23 337 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 ZCCHC4Q9H5U6 513 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 PAQR5Q9NXK6 330 aaPredicted RBP9.53□□□□□ -0.88
CUX1-221ENST00000622516 MYEF2Q9P2K5 600 aaKnown RBP9.53□□□□□ -0.88
CUX1-221ENST00000622516 OR5V1Q9UGF6 321 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 FKBP7Q9Y680 259 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 NPIPA5E9PKD4 350 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 OR2T1O43869 369 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 ITGA10O75578 1167 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 ZFAND5O76080 213 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 UBL3O95164 117 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 DPP4P27487 766 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 SFRP4Q6FHJ7 346 aaPredicted RBP9.53□□□□□ -0.88
CUX1-221ENST00000622516 LRFN4Q6PJG9 635 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 KCTD20Q7Z5Y7 419 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 RPS4Y2Q8TD47 263 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 RASL10BQ96S79 203 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 COMMD4Q9H0A8 199 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 NPIPA1Q9UND3 350 aa9.53□□□□□ -0.88
CUX1-221ENST00000622516 PTRH2Q9Y3E5 179 aaKnown RBP9.53□□□□□ -0.88
CUX1-221ENST00000622516 LOC101059948A0A1B0GTJ6 334 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 ANXA2P2A6NMY6 339 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 ANXA2P07355 339 aaKnown RBP9.52□□□□□ -0.88
CUX1-221ENST00000622516 PTGDSP41222 190 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 ZNF41P51814 821 aaPredicted RBP9.52□□□□□ -0.88
CUX1-221ENST00000622516 B2MP61769 119 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 MYBPHQ13203 477 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 SLC17A1Q14916 467 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 PLA1AQ53H76 456 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 CARD17Q5XLA6 110 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 PLPP7Q8NBV4 271 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 OR5L2Q8NGL0 311 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 ZC3HAV1LQ96H79 300 aaKnown RBP9.52□□□□□ -0.88
CUX1-221ENST00000622516 C4orf45Q96LM5 186 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 OR8B4Q96RC9 309 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 CENPMQ9NSP4 180 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 MRPL39Q9NYK5 338 aaKnown RBP9.52□□□□□ -0.88
CUX1-221ENST00000622516 TMEM14AQ9Y6G1 99 aa9.52□□□□□ -0.88
CUX1-221ENST00000622516 A0A0A6YYJ9 748 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 ZNF814B7Z6K7 855 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 ORC5O43913 435 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 RAMP1O60894 148 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 TRIM3O75382 744 aaPredicted RBP9.52□□□□□ -0.89
CUX1-221ENST00000622516 BIDP55957 195 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 GLO1Q04760 184 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 EGR3Q06889 387 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 TOMM20Q15388 145 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 TMEM255AQ5JRV8 349 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 UBE2NLQ5JXB2 153 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 SLC18B1Q6NT16 456 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 MRPL14Q6P1L8 145 aaKnown RBP9.52□□□□□ -0.89
CUX1-221ENST00000622516 H1FNTQ75WM6 255 aaPredicted RBP9.52□□□□□ -0.89
CUX1-221ENST00000622516 NUP54Q7Z3B4 507 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 DCXRQ7Z4W1 244 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 OR52I2Q8NH67 350 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 POC1BQ8TC44 478 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 STK35Q8TDR2 534 aa9.52□□□□□ -0.89
CUX1-221ENST00000622516 SLC39A7Q92504 469 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms