RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SLIRPQ9GZT3 109 aaKnown RBP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 FAM212BQ9NTI7 297 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 RTTNQ86VV8 2226 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 GLI3P10071 1580 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 CCSO14618 274 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 CXCL10P02778 98 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 CEACAM5P06731 702 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 IL32P24001 234 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 SSR4P51571 173 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 HSD17B11Q8NBQ5 300 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 ZFPM2Q8WW38 1151 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 EID2BQ96D98 161 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 DCBLD2Q96PD2 775 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 OR11A1Q9GZK7 315 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 MCOLN1Q9GZU1 580 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 BANF2Q9H503 90 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 TMEM184BQ9Y519 407 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 PCDHGA5Q9Y5G8 931 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 RPS10-NUDT3A0A1W2PQS6 291 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 MSTNO14793 375 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 ICMTO60725 284 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 RAF1P04049 648 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 SDHAP31040 664 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 RPS10P46783 165 aaKnown RBP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 OTPQ5XKR4 325 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 SMIM19Q96E16 107 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 RNF170Q96K19 258 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 LINC00615Q96LM1 132 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 TCEAL2Q9H3H9 227 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 ISYNA1Q9NPH2 558 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 OBP2BQ9NPH6 170 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 PUS1Q9Y606 427 aaKnown RBP eCLIP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 TOGARAM1Q9Y4F4 1720 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 LOC107986453A0A1B0GWG9 222 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 TMEM235A6NFC5 223 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 TXNL1O43396 289 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 CD27P26842 260 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 EIF1P41567 113 aaKnown RBP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 ZNF169Q14929 603 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 CDK5R1Q15078 307 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 SYS1Q8N2H4 156 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 ARIH2OSQ8N7S6 290 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 ATOH1Q92858 354 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 RBPMSQ93062 196 aaKnown RBP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 ORAI1Q96D31 301 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 MRPL38Q96DV4 380 aaKnown RBP12.82□□□□□ -0.36
CPSF1-212ENST00000616140 ARPC5LQ9BPX5 153 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 PLA2G12AQ9BZM1 189 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 ANKRD10Q9NXR5 420 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 CHRNA9Q9UGM1 479 aa12.82□□□□□ -0.36
CPSF1-212ENST00000616140 GABRB1P18505 474 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 CDC20Q12834 499 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 RUNX2Q13950 521 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 AGERQ15109 404 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 FAAP20Q6NZ36 180 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 BCORP1Q8N888 145 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 FAM213BQ8TBF2 198 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 RNF141Q8WVD5 230 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 SEMA4CQ9C0C4 833 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 SRRQ9GZT4 340 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 ISG20L2Q9H9L3 353 aaKnown RBP12.81□□□□□ -0.36
CPSF1-212ENST00000616140 SLAMF7Q9NQ25 335 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 KIAA1551Q9HCM1 1747 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 SCN7AQ01118 1682 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 PLSCR5A0PG75 271 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 EIF1BO60739 113 aaKnown RBP12.81□□□□□ -0.36
CPSF1-212ENST00000616140 CHRM2P08172 466 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 CD63P08962 238 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 ICAM2P13598 275 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 GZMKP49863 264 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 RPL18Q07020 188 aaKnown RBP12.81□□□□□ -0.36
CPSF1-212ENST00000616140 CORO6Q6QEF8 472 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 ZNF813Q6ZN06 617 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 MDGA2Q7Z553 956 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 IFITM5A6NNB3 132 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 CEBPZOSA8MTT3 80 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 ALOX12BO75342 701 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 MT-CO2P00403 227 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 GLI4P10075 376 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 WNT3P56703 355 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 MFGE8Q08431 387 aaPredicted RBP12.81□□□□□ -0.36
CPSF1-212ENST00000616140 HNF4GQ14541 408 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 PRTGQ2VWP7 1150 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 PXT1Q8NFP0 134 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 EDAQ92838 391 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 CSF3RQ99062 836 aa12.81□□□□□ -0.36
CPSF1-212ENST00000616140 FGF20Q9NP95 211 aaPredicted RBP12.81□□□□□ -0.36
CPSF1-212ENST00000616140 PRAMEF25A6NGN4 478 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 AIPO00170 330 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 HRO43593 1189 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 CALCBP10092 127 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 CHATP28329 748 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 P2RX1P51575 399 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 UBE2MP61081 183 aaKnown RBP12.8□□□□□ -0.36
CPSF1-212ENST00000616140 CLINT1Q14677 625 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 GJC3Q8NFK1 279 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 MALSU1Q96EH3 234 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 MRGPRX1Q96LB2 322 aa12.8□□□□□ -0.36
CPSF1-212ENST00000616140 ING1Q9UK53 422 aaPredicted RBP12.8□□□□□ -0.36
CPSF1-212ENST00000616140 ZNF346Q9UL40 294 aaKnown RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms