RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 HAO2Q9NYQ3 351 aa11.46□□□□□ -0.58
LIG1-221ENST00000613670 PTP4A3O75365 173 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 KNG1P01042 644 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 AVPR2P30518 371 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 OR1D4P47884 311 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 PPP1CAP62136 330 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 CHAF1BQ13112 559 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 FAM53BQ14153 422 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 TMEM151BQ8IW70 566 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 SHISA5Q8N114 240 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 CA13Q8N1Q1 262 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 STPG2Q8N412 459 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 NPEPL1Q8NDH3 523 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 PPP1R1CQ8WVI7 109 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 CCDC74AQ96AQ1 378 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 VOPP1Q96AW1 172 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 ZC3H10Q96K80 434 aaKnown RBP11.45□□□□□ -0.58
LIG1-221ENST00000613670 ATPIF1Q9UII2 106 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 MSRAQ9UJ68 235 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 SLC17A4Q9Y2C5 497 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 MAP1BP46821 2468 aaKnown RBP11.45□□□□□ -0.58
LIG1-221ENST00000613670 A0A087WV62 115 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 LDOC1O95751 146 aaPredicted RBP11.45□□□□□ -0.58
LIG1-221ENST00000613670 CA3P07451 260 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 NGFRP08138 427 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 ITGA5P08648 1049 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 ST6GAL1P15907 406 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 PRICKLE4Q2TBC4 344 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 AWAT2Q6E213 333 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 LCN10Q6JVE6 187 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 SFTPA2Q8IWL1 248 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 OR1J4Q8NGS1 313 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 TMED6Q8WW62 240 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 CNTNAP3BQ96NU0 1288 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 FRRS1LQ9P0K9 344 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 MRM2Q9UI43 246 aaKnown RBP11.45□□□□□ -0.58
LIG1-221ENST00000613670 SLC22A23A1A5C7 686 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 FBXO24O75426 580 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 AKR7A3O95154 331 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 DPP4P27487 766 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 SDHAP31040 664 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 SNTB1Q13884 538 aaKnown RBP11.45□□□□□ -0.58
LIG1-221ENST00000613670 CARD17Q5XLA6 110 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 SVBPQ8N300 66 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 BCORP1Q8N888 145 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 BVESQ8NE79 360 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 OR13C9Q8NGT0 318 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 NUDCD2Q8WVJ2 157 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 ZNRF4Q8WWF5 429 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 MARC2Q969Z3 335 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 DCBLD2Q96PD2 775 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 SPACA5Q96QH8 159 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 CHRNA9Q9UGM1 479 aa11.45□□□□□ -0.58
LIG1-221ENST00000613670 A0A087WUJ7 227 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 PLSCR5A0PG75 271 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 P2RY10O00398 339 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 CTDSPLO15194 276 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 PI3P19957 117 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 SNRPNP63162 240 aaKnown RBP11.44□□□□□ -0.58
LIG1-221ENST00000613670 CBLN3Q6UW01 205 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 SLC37A2Q8TED4 501 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 ZNF649Q9BS31 505 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 SMIM3Q9BZL3 60 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 ZNF230Q9UIE0 474 aaPredicted RBP11.44□□□□□ -0.58
LIG1-221ENST00000613670 PLXND1Q9Y4D7 1925 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 TEX13DA0A0J9YY54 714 aaPredicted RBP11.44□□□□□ -0.58
LIG1-221ENST00000613670 TUBAL3A6NHL2 446 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 H3BML4 177 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 PHYHO14832 338 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 HOXB5P09067 269 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 SLC6A9P48067 706 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 GLO1Q04760 184 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 H3F3CQ6NXT2 135 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 OR2AJ1Q8NGZ0 328 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 PRRT1Q99946 306 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 ACKR4Q9NPB9 350 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 RP1P56715 2156 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 SYT7O43581 403 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 NKX2-2O95096 273 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 H2BFSP57053 126 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 WDR38Q5JTN6 314 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 C1orf189Q5VU69 101 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 CORO6Q6QEF8 472 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 BPIFCQ8NFQ6 507 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 PNPLA2Q96AD5 504 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 KTI12Q96EK9 354 aaPredicted RBP11.44□□□□□ -0.58
LIG1-221ENST00000613670 FAM71F1Q96KD3 344 aaPredicted RBP11.44□□□□□ -0.58
LIG1-221ENST00000613670 SLC25A21Q9BQT8 299 aaPredicted RBP11.44□□□□□ -0.58
LIG1-221ENST00000613670 ST6GALNAC5Q9BVH7 336 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 DNTTIP1Q9H147 329 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 ZNF701Q9NV72 531 aaPredicted RBP11.44□□□□□ -0.58
LIG1-221ENST00000613670 VDAC3Q9Y277 283 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 KLHDC2Q9Y2U9 406 aa11.44□□□□□ -0.58
LIG1-221ENST00000613670 MEGF11A6BM72 1044 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 C2orf72A6NCS6 295 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 CTAG2O75638 210 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 PMP2P02689 132 aa11.43□□□□□ -0.58
LIG1-221ENST00000613670 HOXD4P09016 255 aaPredicted RBP11.43□□□□□ -0.58
LIG1-221ENST00000613670 TPT1P13693 172 aaKnown RBP11.43□□□□□ -0.58
LIG1-221ENST00000613670 CPN1P15169 458 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms