RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 LCN6P62502 163 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 ADAM8P78325 824 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 RFX4Q33E94 735 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 SLC36A2Q495M3 483 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 ADCK1Q86TW2 530 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 SPATA24Q86W54 205 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 TGIF2LYQ8IUE0 185 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 MUC15Q8N387 334 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 OR9Q2Q8NGE9 314 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 CANT1Q8WVQ1 401 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 NABP1Q96AH0 204 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 MS4A3Q96HJ5 214 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 CHID1Q9BWS9 393 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 KCNN2Q9H2S1 579 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 OR52D1Q9H346 318 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 RNF121Q9H920 327 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 CBLN4Q9NTU7 201 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 VNN3Q9NY84 501 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 SLC7A8Q9UHI5 535 aa14.62□□□□□ -0.07
TRIM28-215ENST00000601150 SOCS2O14508 198 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 PPP1R3DO95685 299 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 TXNDC12O95881 172 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 CST1P01037 141 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 GUCA1AP43080 201 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-215ENST00000601150 HGFACQ04756 655 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 PPP1R8Q12972 351 aaKnown RBP14.61□□□□□ -0.07
TRIM28-215ENST00000601150 GK3PQ14409 553 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 RAB39AQ14964 217 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 SGCAQ16586 387 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 Q5PR19 223 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 ZNF770Q6IQ21 691 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-215ENST00000601150 ZNF620Q6ZNG0 422 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 FOXL2NBQ6ZUU3 175 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 KRTAP1-3Q8IUG1 177 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 LRRC18Q8N456 261 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 NUP37Q8NFH4 326 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 TRMT61AQ96FX7 289 aaKnown RBP14.61□□□□□ -0.07
TRIM28-215ENST00000601150 CA10Q9NS85 328 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 U3KQV3 271 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 MAP1AP78559 2803 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-215ENST00000601150 CELSR1Q9NYQ6 3014 aa14.61□□□□□ -0.07
TRIM28-215ENST00000601150 HIVEP1P15822 2718 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 USF3Q68DE3 2245 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 A0A1W2PPL8 197 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 TCRBV3S1A0A5B6 114 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 IMPA2O14732 288 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 SERPINA5P05154 406 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 CDKN1AP38936 164 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 ATP5J2P56134 94 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 MICAQ29983 383 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 FAM27BQ5VT28 67 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 C11orf71Q6IPW1 123 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 RPL13AP3Q6NVV1 102 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 PRSS57Q6UWY2 283 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 AQP11Q8NBQ7 271 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 WFDC11Q8NEX6 87 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 SAMD8Q96LT4 415 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 ERMAPQ96PL5 475 aaPredicted RBP14.6□□□□□ -0.07
TRIM28-215ENST00000601150 MMADHCQ9H3L0 296 aaPredicted RBP14.6□□□□□ -0.07
TRIM28-215ENST00000601150 YY1AP1Q9H869 796 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 CCNB1IP1Q9NPC3 277 aa14.6□□□□□ -0.07
TRIM28-215ENST00000601150 ARPC3O15145 178 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 PTHP01270 115 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 GASTP01350 101 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 MMP7P09237 267 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-215ENST00000601150 ZNF35P13682 527 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 PLP2Q04941 152 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 VHLLQ6RSH7 139 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 YTHDF3Q7Z739 585 aaKnown RBP14.59□□□□□ -0.07
TRIM28-215ENST00000601150 ZNF584Q8IVC4 421 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 IFT27Q9BW83 186 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 SYT4Q9H2B2 425 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 LRMDAQ9H2I8 198 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 C1orf198Q9H425 327 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 ZNF442Q9H7R0 627 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 VSX1Q9NZR4 365 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-215ENST00000601150 SPEF1Q9Y4P9 236 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 CDH10Q9Y6N8 788 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 MED13LQ71F56 2210 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 F8P00451 2351 aa14.59□□□□□ -0.07
TRIM28-215ENST00000601150 IQCMA0A1B0GVH7 501 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 VSTM5A8MXK1 200 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 GNGT2O14610 69 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 IDH3BO43837 385 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 CST2P09228 141 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 BMP4P12644 408 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 CTLA4P16410 223 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 MSR1P21757 451 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 LAP3P28838 519 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 SERPINF1P36955 418 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 CDKN2AP42771 156 aaKnown RBP14.58□□□□□ -0.08
TRIM28-215ENST00000601150 HSF2Q03933 536 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 SNTB2Q13425 540 aaKnown RBP14.58□□□□□ -0.08
TRIM28-215ENST00000601150 DAG1Q14118 895 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 RASSF6Q6ZTQ3 369 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 PTCHD4Q6ZW05 846 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 PAPD5Q8NDF8 572 aaKnown RBP14.58□□□□□ -0.08
TRIM28-215ENST00000601150 SLC30A7Q8NEW0 376 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 OR52L1Q8NGH7 329 aa14.58□□□□□ -0.08
TRIM28-215ENST00000601150 FBXO17Q96EF6 278 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms