RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ATE1O95260 518 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 MMP7P09237 267 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 OR8G3PP0DMU2 310 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 ZNF14P17017 642 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 LAP3P28838 519 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 GIPRP48546 466 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 ZNF84P51523 738 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 IDH3GP51553 393 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 RAB1AP62820 205 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 NAAAQ02083 359 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 HGFACQ04756 655 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 ENDOGQ14249 297 aaKnown RBP12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 RAB39AQ14964 217 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 ACSM5Q6NUN0 579 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 PAMR1Q6UXH9 720 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 SSX8Q7RTT4 187 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 CCDC36Q8IYA8 594 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 PIAS4Q8N2W9 510 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 IQCF1Q8N6M8 205 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 FAM169BQ8N8A8 192 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 FBXO17Q96EF6 278 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 PKP2Q99959 881 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 FN3KQ9H479 309 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 SIAEQ9HAT2 523 aa12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 COA3Q9Y2R0 106 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-217ENST00000598558 IGLV1-36A0A0B4J1U3 117 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 XKRYO14609 159 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 AHCYL1O43865 530 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 MITFO75030 526 aaPredicted RBP12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 ENTPD5O75356 428 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 SOD3P08294 240 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 GSTM3P21266 225 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 FASP25445 335 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 PTDSS1P48651 473 aaKnown RBP12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 COX10Q12887 443 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 NPRL3Q12980 569 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 GSG1Q2KHT4 349 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 PGGHGQ32M88 737 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 SLC36A3Q495N2 470 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 C1QTNF12Q5T7M4 302 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 FAM27BQ5VT28 67 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 FAHD1Q6P587 224 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 LEG1Q6P5S2 330 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 OR6V1Q8N148 313 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 LNX2Q8N448 690 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 CYB561A3Q8NBI2 242 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 SDR9C7Q8NEX9 313 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 OR52E2Q8NGJ4 325 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 OR5K1Q8NHB7 308 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 NRBF2Q96F24 287 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 NDEL1Q9GZM8 345 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 SEMA6AQ9H2E6 1030 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 RERGLQ9H628 205 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 SRA1Q9HD15 236 aaKnown RBP12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 EMC7Q9NPA0 242 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 POLE4Q9NR33 117 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 TBC1D23Q9NUY8 699 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 B9D1Q9UPM9 204 aa12.33□□□□□ -0.44
SHKBP1-217ENST00000598558 TEX15Q9BXT5 2789 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 IGHV2OR16-5A0A0B4J2B6 119 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 A0A1W2PPL8 197 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 FAM171A2A8MVW0 826 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 IDH3BO43837 385 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 CD8AP01732 235 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 DANCRP0C864 163 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 ANXA8P13928 327 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 ARR3P36575 388 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 C3orf36Q3SXR2 165 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 NRN1LQ496H8 165 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 SLC22A25Q6T423 547 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 SLC16A14Q7RTX9 510 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 ADCK1Q86TW2 530 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 PAQR4Q8N4S7 273 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 ZNF611Q8N823 705 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 SLC37A3Q8NCC5 494 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 CPEB3Q8NE35 698 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 FNDC8Q8TC99 324 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 RADILQ96JH8 1075 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 ZNF416Q9BWM5 594 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 CISD1Q9NZ45 108 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 SPG11Q96JI7 2443 aa12.32□□□□□ -0.44
SHKBP1-217ENST00000598558 KHDRBS3O75525 346 aaKnown RBP12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 UBL3O95164 117 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 TFP02787 698 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 RAF1P04049 648 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 CCL2P13500 99 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 ZNF35P13682 527 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 OSMP13725 252 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 ZNF32P17041 273 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 POU1F1P28069 291 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 CDH11P55287 796 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 PSG4Q00888 419 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 GABPB1Q06547 395 aaPredicted RBP12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 GINS1Q14691 196 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 MEP1BQ16820 701 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 MSMPQ1L6U9 139 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 TMEM236Q5W0B7 351 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 RPL13AP3Q6NVV1 102 aa12.31□□□□□ -0.44
SHKBP1-217ENST00000598558 ATG16L2Q8NAA4 619 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms