RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ZNF670-ZNF695F2Z2N8 137 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 SELENOFO60613 162 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 IL2RAP01589 272 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 C21orf33P30042 268 aaPredicted RBP13.66□□□□□ -0.22
UPF1-206ENST00000598471 ENTPD1P49961 510 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 HSF2Q03933 536 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 DBPQ10586 325 aaPredicted RBP13.66□□□□□ -0.22
UPF1-206ENST00000598471 STK11Q15831 433 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 ETFDHQ16134 617 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 LRFN4Q6PJG9 635 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 KCTD8Q6ZWB6 473 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 TIGD4Q8IY51 512 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 GCNT2Q8N0V5 402 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 ZNF843Q8N446 348 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 ST6GALNAC3Q8NDV1 305 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 SLC26A10Q8NG04 563 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 OR6K3Q8NGY3 331 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 OR6N2Q8NGY6 317 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 MND1Q9BWT6 205 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 RBM24Q9BX46 236 aaKnown RBP13.66□□□□□ -0.22
UPF1-206ENST00000598471 SEC61A2Q9H9S3 476 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 KCNG2Q9UJ96 466 aa13.66□□□□□ -0.22
UPF1-206ENST00000598471 ITPR1Q14643 2758 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 IGKV1D-43A0A0B4J1Z2 117 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 ZNF587BE7ETH6 402 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 J3QRE1 110 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 PHYHO14832 338 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 TMCC2O75069 709 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 UPK3AO75631 287 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 GAAP10253 952 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 NTF4P34130 210 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 TIMP3P35625 211 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 OR3A2P47893 321 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 NR1H2P55055 460 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 SIRPAP78324 504 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 ADAM8P78325 824 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 BLMHQ13867 455 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 GUSBP1Q15486 140 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 PHYHD1Q5SRE7 291 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 TSPO2Q5TGU0 170 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 NUFIP2Q7Z417 695 aaKnown RBP13.65□□□□□ -0.22
UPF1-206ENST00000598471 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.65□□□□□ -0.22
UPF1-206ENST00000598471 UBE2J2Q8N2K1 259 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 KLHL36Q8N4N3 616 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 CNEP1R1Q8N9A8 125 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 RORBQ92753 470 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 FOXN4Q96NZ1 517 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 ALKBH3Q96Q83 286 aaPredicted RBP13.65□□□□□ -0.22
UPF1-206ENST00000598471 C12orf49Q9H741 205 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 WDR76Q9H967 626 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 CRLF2Q9HC73 371 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 GPR35Q9HC97 309 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 POLR1DQ9Y2S0 133 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 FAM215AQ9Y5M1 114 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 ATMQ13315 3056 aa13.65□□□□□ -0.22
UPF1-206ENST00000598471 TLN1Q9Y490 2541 aaKnown RBP13.65□□□□□ -0.22
UPF1-206ENST00000598471 TMEM129A0AVI4 362 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 TFP02787 698 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 SPARCP09486 303 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 TMIGD3P0DMS9 266 aaPredicted RBP13.64□□□□□ -0.23
UPF1-206ENST00000598471 NPR2P20594 1047 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 ACTA2P62736 377 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 ACTG2P63267 376 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 ROR2Q01974 943 aaKnown RBP13.64□□□□□ -0.23
UPF1-206ENST00000598471 EMX1Q04741 257 aaPredicted RBP13.64□□□□□ -0.23
UPF1-206ENST00000598471 IRF3Q14653 427 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 NEDD8Q15843 81 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 KCNMB1Q16558 191 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 RTL6Q6ICC9 239 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 LYPD4Q6UWN0 246 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 TMPRSS11AQ6ZMR5 421 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 FOXL2NBQ6ZUU3 175 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.64□□□□□ -0.23
UPF1-206ENST00000598471 DOLPP1Q86YN1 238 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 ZNF454Q8N9F8 522 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 C11orf40Q8WZ69 217 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 TBX5Q99593 518 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 CDADC1Q9BWV3 514 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 NELFAQ9H3P2 528 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 ACOT13Q9NPJ3 140 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 POLE4Q9NR33 117 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 SLC7A10Q9NS82 523 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 MRPL22Q9NWU5 206 aaKnown RBP13.64□□□□□ -0.23
UPF1-206ENST00000598471 ERVK13-1Q9NX77 482 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 LAMP5Q9UJQ1 280 aa13.64□□□□□ -0.23
UPF1-206ENST00000598471 RPL36A-HNRNPH2H7BZ11 118 aa13.63□□□□□ -0.23
UPF1-206ENST00000598471 ZNF593O00488 134 aaPredicted RBP13.63□□□□□ -0.23
UPF1-206ENST00000598471 GPANK1O95872 356 aa13.63□□□□□ -0.23
UPF1-206ENST00000598471 IGHV3-9P01782 118 aa13.63□□□□□ -0.23
UPF1-206ENST00000598471 MSR1P21757 451 aa13.63□□□□□ -0.23
UPF1-206ENST00000598471 MAP2K4P45985 399 aa13.63□□□□□ -0.23
UPF1-206ENST00000598471 RPL5P46777 297 aaKnown RBP13.63□□□□□ -0.23
UPF1-206ENST00000598471 CAPZA2P47755 286 aa13.63□□□□□ -0.23
UPF1-206ENST00000598471 ETV1P50549 477 aa13.63□□□□□ -0.23
UPF1-206ENST00000598471 MRPS34P82930 218 aaKnown RBP13.63□□□□□ -0.23
UPF1-206ENST00000598471 GALEQ14376 348 aa13.63□□□□□ -0.23
UPF1-206ENST00000598471 SGCAQ16586 387 aa13.63□□□□□ -0.23
UPF1-206ENST00000598471 CEACAM16Q2WEN9 425 aa13.63□□□□□ -0.23
UPF1-206ENST00000598471 TEX30Q5JUR7 227 aa13.63□□□□□ -0.23
UPF1-206ENST00000598471 FBXW9Q5XUX1 488 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms