RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SPOCK1Q08629 439 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 ZNF626Q68DY1 528 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 TSSK4Q6SA08 328 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 PDZD9Q8IXQ8 264 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 C7orf61Q8IZ16 206 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 CHST4Q8NCG5 386 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 GPR148Q8TDV2 347 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 SFXN1Q9H9B4 322 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 NMBP08949 121 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 RNH1P13489 461 aaKnown RBP13.84□□□□□ -0.19
UPF1-204ENST00000596842 TACR3P29371 465 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 KIR2DL1P43626 348 aaPredicted RBP13.84□□□□□ -0.19
UPF1-204ENST00000596842 KCNJ3P48549 501 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 ETFDHQ16134 617 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 DMRTC1Q5HYR2 192 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 LINC01590Q5TEZ4 76 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 CLRN3Q8NCR9 226 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 GDE1Q9NZC3 331 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 NOP16Q9Y3C1 178 aaKnown RBP13.84□□□□□ -0.19
UPF1-204ENST00000596842 OR5K3A6NET4 321 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 RENP00797 406 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 RNF224P0DH78 156 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 HNRNPA2B1P22626 353 aaKnown RBP13.84□□□□□ -0.19
UPF1-204ENST00000596842 MAPK3P27361 379 aaPredicted RBP13.84□□□□□ -0.19
UPF1-204ENST00000596842 MCATQ8IVS2 390 aaKnown RBP13.84□□□□□ -0.19
UPF1-204ENST00000596842 LILRB2Q8N423 598 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 OR2AK2Q8NG84 335 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 METTL21AQ8WXB1 218 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 G6PC3Q9BUM1 346 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 FAM74A7A6NL05 159 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 FARS2O95363 451 aaKnown RBP13.84□□□□□ -0.19
UPF1-204ENST00000596842 CT45A8P0DMV1 189 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 CT45A9P0DMV2 189 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 COL19A1Q14993 1142 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 FAM74A3Q4VXF1 159 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 CT45A2Q5DJT8 189 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 SSX9Q7RTT3 188 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 ADGRG3Q86Y34 549 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 THAP6Q8TBB0 222 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 CCDC74AQ96AQ1 378 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 VSTM2LQ96N03 204 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 NPAS1Q99742 590 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 POFUT1Q9H488 388 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 OPN4Q9UHM6 478 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 ICAM5Q9UMF0 924 aa13.84□□□□□ -0.19
UPF1-204ENST00000596842 CTDSPLO15194 276 aa13.83□□□□□ -0.19
UPF1-204ENST00000596842 GLSO94925 669 aaPredicted RBP13.83□□□□□ -0.19
UPF1-204ENST00000596842 ITGA5P08648 1049 aa13.83□□□□□ -0.19
UPF1-204ENST00000596842 PBX2P40425 430 aa13.83□□□□□ -0.19
UPF1-204ENST00000596842 FLI1Q01543 452 aaPredicted RBP13.83□□□□□ -0.19
UPF1-204ENST00000596842 GK2Q14410 553 aaPredicted RBP13.83□□□□□ -0.19
UPF1-204ENST00000596842 C2orf76Q3KRA6 126 aa13.83□□□□□ -0.19
UPF1-204ENST00000596842 SLC16A9Q7RTY1 509 aa13.83□□□□□ -0.19
UPF1-204ENST00000596842 KRT77Q7Z794 578 aa13.83□□□□□ -0.19
UPF1-204ENST00000596842 C17orf105B2RV13 164 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 YKT6O15498 198 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 CDC40O60508 579 aaKnown RBP eCLIP13.83□□□□□ -0.2
UPF1-204ENST00000596842 SLC16A7O60669 478 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 PSMD4P55036 377 aaKnown RBP13.83□□□□□ -0.2
UPF1-204ENST00000596842 SKP1P63208 163 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 DEFA6Q01524 100 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 NHLRC3Q5JS37 347 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 MARCH3Q86UD3 253 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 INTS14Q96SY0 518 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 MAP3K3Q99759 626 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 ZNF471Q9BX82 626 aaPredicted RBP13.83□□□□□ -0.2
UPF1-204ENST00000596842 CENPMQ9NSP4 180 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 GPR160Q9UJ42 338 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 GGT3PA6NGU5 568 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 PRAMEF2O60811 474 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 SLC25A12O75746 678 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 OR1D4P47884 311 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 TOMM34Q15785 309 aaPredicted RBP13.83□□□□□ -0.2
UPF1-204ENST00000596842 CCDC157Q569K6 752 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 PRAMEF17Q5VTA0 474 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 BEST3Q8N1M1 668 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 ZSCAN1Q8NBB4 408 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 ACBD4Q8NC06 268 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 FAM71CQ8NEG0 241 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 OR4S1Q8NGB4 309 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 WNT2BQ93097 391 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 FAM3DQ96BQ1 224 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 CTHRC1Q96CG8 243 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 ZNF426Q9BUY5 554 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 RPH3AQ9Y2J0 694 aaPredicted RBP13.83□□□□□ -0.2
UPF1-204ENST00000596842 KCNMB2Q9Y691 235 aa13.83□□□□□ -0.2
UPF1-204ENST00000596842 UPK3AO75631 287 aa13.82□□□□□ -0.2
UPF1-204ENST00000596842 VAMP1P23763 118 aa13.82□□□□□ -0.2
UPF1-204ENST00000596842 CXCR1P25024 350 aa13.82□□□□□ -0.2
UPF1-204ENST00000596842 WDR38Q5JTN6 314 aa13.82□□□□□ -0.2
UPF1-204ENST00000596842 GLYATL3Q5SZD4 288 aa13.82□□□□□ -0.2
UPF1-204ENST00000596842 ATRAIDQ6UW56 229 aa13.82□□□□□ -0.2
UPF1-204ENST00000596842 UNQ9370/PRO34162Q6UXP9 181 aa13.82□□□□□ -0.2
UPF1-204ENST00000596842 KCTD9Q7L273 389 aa13.82□□□□□ -0.2
UPF1-204ENST00000596842 CMIPQ8IY22 773 aa13.82□□□□□ -0.2
UPF1-204ENST00000596842 TMEM185AQ8NFB2 350 aa13.82□□□□□ -0.2
UPF1-204ENST00000596842 STEAP1Q9UHE8 339 aa13.82□□□□□ -0.2
UPF1-204ENST00000596842 IGKV1D-42A0A075B6H8 117 aa13.82□□□□□ -0.2
UPF1-204ENST00000596842 A0A1W2PQF6 199 aa13.82□□□□□ -0.2
UPF1-204ENST00000596842 C2orf72A6NCS6 295 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms