RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 CD53P19397 219 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 PRKACGP22612 351 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 CALCRP30988 508 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 CDKN2AP42771 156 aaKnown RBP9.64□□□□□ -0.87
LIG1-211ENST00000596457 FABP6P51161 128 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 NAAAQ02083 359 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 ZNF770Q6IQ21 691 aaPredicted RBP9.64□□□□□ -0.87
LIG1-211ENST00000596457 ZNF620Q6ZNG0 422 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 C20orf204Q6ZNR8 217 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 RASSF6Q6ZTQ3 369 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 PTCHD4Q6ZW05 846 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.64□□□□□ -0.87
LIG1-211ENST00000596457 MYPOPQ86VE0 399 aaPredicted RBP9.64□□□□□ -0.87
LIG1-211ENST00000596457 HS3ST5Q8IZT8 346 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 ZNF611Q8N823 705 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 PAPD5Q8NDF8 572 aaKnown RBP9.64□□□□□ -0.87
LIG1-211ENST00000596457 OR4K13Q8NH42 304 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 FNDC8Q8TC99 324 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 SMAP2Q8WU79 429 aaPredicted RBP9.64□□□□□ -0.87
LIG1-211ENST00000596457 TMEM171Q8WVE6 324 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 UTP4Q969X6 686 aaKnown RBP9.64□□□□□ -0.87
LIG1-211ENST00000596457 MBD6Q96DN6 1003 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 MS4A3Q96HJ5 214 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 GPX7Q96SL4 187 aaPredicted RBP9.64□□□□□ -0.87
LIG1-211ENST00000596457 FEVQ99581 238 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 NIPSNAP1Q9BPW8 284 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 TSSK6Q9BXA6 273 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 PLA2G12AQ9BZM1 189 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 SYT4Q9H2B2 425 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 SRA1Q9HD15 236 aaKnown RBP9.64□□□□□ -0.87
LIG1-211ENST00000596457 CCNB1IP1Q9NPC3 277 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 B3GNT2Q9NY97 397 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 ZNF224Q9NZL3 707 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 DNAJB9Q9UBS3 223 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 AP4S1Q9Y587 144 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 CCDC168Q8NDH2 2452 aa9.64□□□□□ -0.87
LIG1-211ENST00000596457 DSCAMO60469 2012 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 ALPK2Q86TB3 2170 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 H3BN98 237 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 SMPD2O60906 423 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 KHDRBS3O75525 346 aaKnown RBP9.63□□□□□ -0.87
LIG1-211ENST00000596457 HIST1H1CP16403 213 aaKnown RBP9.63□□□□□ -0.87
LIG1-211ENST00000596457 HOXB4P17483 251 aaPredicted RBP9.63□□□□□ -0.87
LIG1-211ENST00000596457 HOXB6P17509 224 aaKnown RBP9.63□□□□□ -0.87
LIG1-211ENST00000596457 NPR2P20594 1047 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 GSTM3P21266 225 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 PAX7P23759 505 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 POU1F1P28069 291 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 LAP3P28838 519 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 ARHGDIAP52565 204 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 ZNF133P52736 654 aaPredicted RBP9.63□□□□□ -0.87
LIG1-211ENST00000596457 MRPS34P82930 218 aaKnown RBP9.63□□□□□ -0.87
LIG1-211ENST00000596457 HSF2Q03933 536 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.63□□□□□ -0.87
LIG1-211ENST00000596457 DBPQ10586 325 aaPredicted RBP9.63□□□□□ -0.87
LIG1-211ENST00000596457 DEFB113Q30KQ7 82 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 SLC36A2Q495M3 483 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 C1QTNF12Q5T7M4 302 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 OTPQ5XKR4 325 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 RPL13AP3Q6NVV1 102 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 B3GLCTQ6Y288 498 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 ZNF627Q7L945 461 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 AMIGO2Q86SJ2 522 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 SDR9C7Q8NEX9 313 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 OR52E2Q8NGJ4 325 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 OR8D4Q8NGM9 314 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 PIGTQ969N2 578 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 NMD3Q96D46 503 aaKnown RBP9.63□□□□□ -0.87
LIG1-211ENST00000596457 TSSK2Q96PF2 358 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 NMNAT3Q96T66 252 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 DGCR6LQ9BY27 220 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 NUAK2Q9H093 628 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 FN3KQ9H479 309 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 ZNF556Q9HAH1 456 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 SIAEQ9HAT2 523 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 SMURF2Q9HAU4 748 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 EMC7Q9NPA0 242 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 ARMC1Q9NVT9 282 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 CRNNQ9UBG3 495 aaPredicted RBP9.63□□□□□ -0.87
LIG1-211ENST00000596457 COA3Q9Y2R0 106 aaPredicted RBP9.63□□□□□ -0.87
LIG1-211ENST00000596457 UGT2A1Q9Y4X1 527 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 CDH10Q9Y6N8 788 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 DCHS2Q6V1P9 2916 aa9.63□□□□□ -0.87
LIG1-211ENST00000596457 IQCMA0A1B0GVH7 501 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 FAM171A2A8MVW0 826 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 DEAF1O75398 565 aaPredicted RBP9.62□□□□□ -0.87
LIG1-211ENST00000596457 GPANK1O95872 356 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 TXNDC12O95881 172 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 IGKV3-15P01624 115 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 IGLV1-44P01699 117 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 SCG5P05408 212 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 SOD3P08294 240 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 CCL2P13500 99 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 CTLA4P16410 223 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 ZNF32P17041 273 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 CDKN1AP38936 164 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 PLP2Q04941 152 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 GK3PQ14409 553 aa9.62□□□□□ -0.87
LIG1-211ENST00000596457 KPNB1Q14974 876 aaKnown RBP9.62□□□□□ -0.87
LIG1-211ENST00000596457 KRT80Q6KB66 452 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms