RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 HMGA2P52926 109 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 CAMK2DQ13557 499 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 FHL1Q13642 323 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 MELKQ14680 651 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 LAPTM4AQ15012 233 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 TAF11Q15544 211 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 CEACAM16Q2WEN9 425 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 FAM166AQ6J272 317 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 CCDC121Q6ZUS5 278 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 MEX3DQ86XN8 651 aaKnown RBP10.8□□□□□ -0.68
UPF1-203ENST00000594504 ADGRG5Q8IZF4 528 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 OR13C2Q8NGS9 318 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 OR6N1Q8NGY5 312 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 OR51A7Q8NH64 312 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 MAGEE2Q8TD90 523 aaPredicted RBP10.8□□□□□ -0.68
UPF1-203ENST00000594504 ZNF566Q969W8 418 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 SLC25A44Q96H78 314 aaPredicted RBP10.8□□□□□ -0.68
UPF1-203ENST00000594504 NDEL1Q9GZM8 345 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 PLK3Q9H4B4 646 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 CRLF2Q9HC73 371 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 GPR35Q9HC97 309 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 STX18Q9P2W9 335 aaKnown RBP10.8□□□□□ -0.68
UPF1-203ENST00000594504 LPAR3Q9UBY5 353 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 KCNS2Q9ULS6 477 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 AURKCQ9UQB9 309 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 LYVE1Q9Y5Y7 322 aa10.8□□□□□ -0.68
UPF1-203ENST00000594504 TRAV27A0A087WT01 109 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 LOC390937A0A1W2PQ73 354 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 CENPBD1B2RD01 187 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 LYNX1G3V0Z9 82 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 NDUFS8O00217 210 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 TNFRSF11BO00300 401 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 IGKV3-15P01624 115 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 IGHG1P01857 330 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 IGFBP1P08833 259 aaPredicted RBP10.79□□□□□ -0.68
UPF1-203ENST00000594504 LYNX1P0DP58 116 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 SRD5A1P18405 259 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 IL2RGP31785 369 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 CBX1P83916 185 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 NPRL3Q12980 569 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 EFNB3Q15768 340 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 ZBED5Q49AG3 693 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 OR2T5Q6IEZ7 315 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 SPATA24Q86W54 205 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 WDFY1Q8IWB7 410 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 SVOPLQ8N434 492 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 LINC00471Q8N535 108 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 OR2T29Q8NH02 315 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 CANT1Q8WVQ1 401 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 ASB10Q8WXI3 467 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 TMEM54Q969K7 222 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 DOK1Q99704 481 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 CHID1Q9BWS9 393 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 ULBP2Q9BZM5 246 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 TXNIPQ9H3M7 391 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 SIGLEC7Q9Y286 467 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 PLCE1Q9P212 2302 aa10.79□□□□□ -0.68
UPF1-203ENST00000594504 TCRBV3S1A0A5B6 114 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 ZNF99A8MXY4 864 aaPredicted RBP10.78□□□□□ -0.68
UPF1-203ENST00000594504 EBAG9O00559 213 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 OR10H3O60404 316 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 IGHMP01871 453 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 PGA4P0DJD7 388 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 PGA3P0DJD8 388 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 HOXB1P14653 301 aaPredicted RBP10.78□□□□□ -0.68
UPF1-203ENST00000594504 ZNF23P17027 643 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 NPR2P20594 1047 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 FPR3P25089 353 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 CAPZA2P47755 286 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 PPOXP50336 477 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 CLRN1P58418 232 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 CTXN1P60606 82 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 RPL27P61353 136 aaKnown RBP10.78□□□□□ -0.68
UPF1-203ENST00000594504 GK3PQ14409 553 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 ARMC4Q5T2S8 1044 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 FAM205BPQ63HN1 556 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 ZER1Q7Z7L7 766 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 MDP1Q86V88 176 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 LRRC75AQ8NAA5 344 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 NOXO1Q8NFA2 376 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 OR4F15Q8NGB8 312 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 RSRC1Q96IZ7 334 aaKnown RBP10.78□□□□□ -0.68
UPF1-203ENST00000594504 C19orf24Q9BVV8 132 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 RAB1BQ9H0U4 201 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 YY1AP1Q9H869 796 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 REEP1Q9H902 201 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 NOX3Q9HBY0 568 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 GLTPQ9NZD2 209 aa10.78□□□□□ -0.68
UPF1-203ENST00000594504 IGHV2OR16-5A0A0B4J2B6 119 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 UNC119BA6NIH7 251 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 A6NIZ1 184 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 LILRA1O75019 489 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 PTP4A3O75365 173 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 NDUFB2O95178 105 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 CST1P01037 141 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 CD14P08571 375 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 NR2C1P13056 603 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 DAOP14920 347 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 ACADSP16219 412 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 PAX7P23759 505 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms