RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 VNN3Q9NY84 501 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 IL20Q9NYY1 176 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 UGT2A1Q9Y4X1 527 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 CCDC168Q8NDH2 2452 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 ARRDC5A6NEK1 342 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 VSTM5A8MXK1 200 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 ATP6V1G2-DDX39BF2Z307 99 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 H7C1C5 153 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 SOCS2O14508 198 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 CIB2O75838 187 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 PPP1R3DO95685 299 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 CELA3BP08861 270 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 ZNF14P17017 642 aaPredicted RBP13.05□□□□□ -0.32
UPF1-202ENST00000594243 APOBEC3AP31941 199 aaPredicted RBP13.05□□□□□ -0.32
UPF1-202ENST00000594243 CDAP32320 146 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 TTKP33981 857 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 FABP6P51161 128 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 LCN6P62502 163 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 PLP2Q04941 152 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 TESK1Q15569 626 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 PGGHGQ32M88 737 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 FBXL14Q8N1E6 418 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 OR10G2Q8NGC3 310 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 IGFBPL1Q8WX77 278 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 GTPBP3Q969Y2 492 aaKnown RBP13.05□□□□□ -0.32
UPF1-202ENST00000594243 SLCO4A1Q96BD0 722 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 ZNF75AQ96N20 296 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 GRIP2Q9C0E4 1043 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 EGLN3Q9H6Z9 239 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 CCNB1IP1Q9NPC3 277 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 VSX1Q9NZR4 365 aaPredicted RBP13.05□□□□□ -0.32
UPF1-202ENST00000594243 DNAJB9Q9UBS3 223 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 SPEF1Q9Y4P9 236 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 CDH10Q9Y6N8 788 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 CELSR1Q9NYQ6 3014 aa13.05□□□□□ -0.32
UPF1-202ENST00000594243 IQCMA0A1B0GVH7 501 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 A0A1W2PPL8 197 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 E2F6O75461 281 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 KHDRBS3O75525 346 aaKnown RBP13.04□□□□□ -0.32
UPF1-202ENST00000594243 RENP00797 406 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 SERPINA5P05154 406 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 SOD3P08294 240 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 PATE4P0C8F1 98 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 CRABP1P29762 137 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 CALCRP30988 508 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 CDKN2AP42771 156 aaKnown RBP13.04□□□□□ -0.32
UPF1-202ENST00000594243 ERFP50548 548 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 RAB39AQ14964 217 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 DNM1P34Q6PK57 102 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 CD300LDQ6UXZ3 194 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 SPNS3Q6ZMD2 512 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 FOXL2NBQ6ZUU3 175 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 JAZF1Q86VZ6 243 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 MUC15Q8N387 334 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 FGFBP3Q8TAT2 258 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 NABP1Q96AH0 204 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 TRMT61AQ96FX7 289 aaKnown RBP13.04□□□□□ -0.32
UPF1-202ENST00000594243 SNX18Q96RF0 628 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 FEVQ99581 238 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 WACQ9BTA9 647 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 SYT4Q9H2B2 425 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 C1orf198Q9H425 327 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 NOX3Q9HBY0 568 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 CBLN4Q9NTU7 201 aa13.04□□□□□ -0.32
UPF1-202ENST00000594243 PDP1Q9P0J1 537 aaPredicted RBP13.04□□□□□ -0.32
UPF1-202ENST00000594243 RAI1Q7Z5J4 1906 aaPredicted RBP13.03□□□□□ -0.32
UPF1-202ENST00000594243 IGHV2OR16-5A0A0B4J2B6 119 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 SLC16A7O60669 478 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 DEAF1O75398 565 aaPredicted RBP13.03□□□□□ -0.32
UPF1-202ENST00000594243 CST2P09228 141 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 BMP4P12644 408 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 PAX1P15863 534 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 HIST1H1CP16403 213 aaKnown RBP13.03□□□□□ -0.32
UPF1-202ENST00000594243 MSR1P21757 451 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 LAP3P28838 519 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 PCBD1P61457 104 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 NKX6-1P78426 367 aaPredicted RBP13.03□□□□□ -0.32
UPF1-202ENST00000594243 ETFDHQ16134 617 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 CLEC12AQ5QGZ9 265 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 SHEQ5VZ18 495 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 LEG1Q6P5S2 330 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 B3GLCTQ6Y288 498 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 PTCHD4Q6ZW05 846 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 SYT9Q86SS6 491 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 DTX2Q86UW9 622 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 MYPOPQ86VE0 399 aaPredicted RBP13.03□□□□□ -0.32
UPF1-202ENST00000594243 NUP37Q8NFH4 326 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 OR1J2Q8NGS2 313 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 HTRA1Q92743 480 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 DUS3LQ96G46 650 aaKnown RBP13.03□□□□□ -0.32
UPF1-202ENST00000594243 MS4A3Q96HJ5 214 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 TRAF4Q9BUZ4 470 aaPredicted RBP13.03□□□□□ -0.32
UPF1-202ENST00000594243 GSX2Q9BZM3 304 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 NUAK2Q9H093 628 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 RERGLQ9H628 205 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 ZNF556Q9HAH1 456 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 CA10Q9NS85 328 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 TBC1D23Q9NUY8 699 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 ARMC1Q9NVT9 282 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 BAIAP2Q9UQB8 552 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms