RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 KRT77Q7Z794 578 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 SNX29P2Q8IUI4 249 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 OR8H2Q8N162 312 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 BEST3Q8N1M1 668 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 POC5Q8NA72 575 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 FAM83FQ8NEG4 500 aaPredicted RBP12.68□□□□□ -0.38
LIG3-205ENST00000585941 NOXO1Q8NFA2 376 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 OR13C5Q8NGS8 318 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 OR52N5Q8NH56 324 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 RNF128Q8TEB7 428 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 ABTB1Q969K4 478 aaPredicted RBP12.68□□□□□ -0.38
LIG3-205ENST00000585941 MAP6Q96JE9 813 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 DCBLD2Q96PD2 775 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 OR14A2Q96R54 314 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 UBL7Q96S82 380 aaPredicted RBP12.68□□□□□ -0.38
LIG3-205ENST00000585941 SDHCQ99643 169 aaPredicted RBP12.68□□□□□ -0.38
LIG3-205ENST00000585941 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.68□□□□□ -0.38
LIG3-205ENST00000585941 SLITRK2Q9H156 845 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 CCDC86Q9H6F5 360 aaKnown RBP12.68□□□□□ -0.38
LIG3-205ENST00000585941 PARD6AQ9NPB6 346 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 SLCO1C1Q9NYB5 712 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 STMN3Q9NZ72 180 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 FRRS1LQ9P0K9 344 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 ABRACLQ9P1F3 81 aa12.68□□□□□ -0.38
LIG3-205ENST00000585941 LOC101059948A0A1B0GTJ6 334 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 OR4C45A6NMZ5 311 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 MASP2O00187 686 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 HPGDSO60760 199 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 GPANK1O95872 356 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 SRMP19623 302 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 CNR1P21554 472 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 APEX1P27695 318 aaKnown RBP12.67□□□□□ -0.38
LIG3-205ENST00000585941 OC90Q02509 493 aaPredicted RBP12.67□□□□□ -0.38
LIG3-205ENST00000585941 C19orf57Q0VDD7 668 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 RIN1Q13671 783 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 POU4F3Q15319 338 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 MEP1BQ16820 701 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 DCAF10Q5QP82 559 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 GPAT4Q86UL3 456 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 NR2C2APQ86WQ0 139 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 LRRC28Q86X40 367 aaPredicted RBP12.67□□□□□ -0.38
LIG3-205ENST00000585941 OR10H5Q8NGA6 315 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 FER1L6-AS2Q96M78 137 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 DERL3Q96Q80 235 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 SOSTQ9BQB4 213 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 MRI1Q9BV20 369 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 ABHD6Q9BV23 337 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 ELOVL3Q9HB03 270 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 DMDP11532 3685 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 A0A0G2JK05 382 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 TRBV5-5A0A0J9YX44 114 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 ZNF726A6NNF4 738 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 G3V3Y1 287 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 LINC01387J3KSC0 135 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 MAGEB3O15480 346 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 OPN1LWP04000 364 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 PGA4P0DJD7 388 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 PGA3P0DJD8 388 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 TALDO1P37837 337 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 DNASE1L1P49184 302 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 SCN1BQ07699 218 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 C11orf91Q3C1V1 193 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 CNIH2Q6PI25 160 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 TMPRSS12Q86WS5 348 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 ZNF676Q8N7Q3 588 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 GPR148Q8TDV2 347 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 C4orf45Q96LM5 186 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 NOX4Q9NPH5 578 aa12.67□□□□□ -0.38
LIG3-205ENST00000585941 BOKQ9UMX3 212 aaPredicted RBP12.67□□□□□ -0.38
LIG3-205ENST00000585941 A0A0C4DFX4 3053 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 PCSK5Q92824 1860 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 GPR171O14626 319 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 LAP3P28838 519 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 THBS2P35442 1172 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 RPS27P42677 84 aaKnown RBP12.66□□□□□ -0.38
LIG3-205ENST00000585941 AGFG1P52594 562 aaKnown RBP12.66□□□□□ -0.38
LIG3-205ENST00000585941 FMODQ06828 376 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 TOMM20Q15388 145 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 LRRN1Q6UXK5 716 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 ASB18Q6ZVZ8 466 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 IL22RA1Q8N6P7 574 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 OR14L1PQ8NHC6 308 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 HSD17B8Q92506 261 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 NKD1Q969G9 470 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 CMTM3Q96MX0 182 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 AMELYQ99218 206 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 UTP23Q9BRU9 249 aaKnown RBP12.66□□□□□ -0.38
LIG3-205ENST00000585941 ZFP64Q9NPA5 681 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 ANKRD10Q9NXR5 420 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 LRFN1Q9P244 771 aa12.66□□□□□ -0.38
LIG3-205ENST00000585941 CACNA1CQ13936 2221 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 KIAA1549Q9HCM3 1950 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 FAM25AB3EWG3 89 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 FAM25CB3EWG5 89 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 FAM25GB3EWG6 89 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 FTH1P19P0C7X4 201 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 EPXP11678 715 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 PSKH1P11801 424 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 IL7P13232 177 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 RBMS1P29558 406 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms