RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 KRTAP1-3Q8IUG1 177 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 OR9Q2Q8NGE9 314 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 OR2T29Q8NH02 315 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 FGFBP3Q8TAT2 258 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 ERMAPQ96PL5 475 aaPredicted RBP16.9■□□□□ 0.3
SS18-209ENST00000578595 GPA33Q99795 319 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 FUZQ9BT04 418 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 IFT27Q9BW83 186 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 OR52D1Q9H346 318 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 CDH20Q9HBT6 801 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 GDF2Q9UK05 429 aaPredicted RBP16.9■□□□□ 0.3
SS18-209ENST00000578595 SAMHD1Q9Y3Z3 626 aaKnown RBP16.9■□□□□ 0.3
SS18-209ENST00000578595 SPEF1Q9Y4P9 236 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 LYVE1Q9Y5Y7 322 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 PMF1-BGLAPU3KQ54 211 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 CHD3Q12873 2000 aaKnown RBP16.89■□□□□ 0.29
SS18-209ENST00000578595 IQCMA0A1B0GVH7 501 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 DHRS12A0PJE2 317 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 OVOL3O00110 214 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 GNGT2O14610 69 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 OR4A8P0C604 315 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 RAP2AP10114 183 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 ZNF14P17017 642 aaPredicted RBP16.89■□□□□ 0.29
SS18-209ENST00000578595 NPR2P20594 1047 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 FPR3P25089 353 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 NOS3P29474 1203 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 MAGEA2P43356 314 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 CENPAP49450 140 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 MRPS34P82930 218 aaKnown RBP16.89■□□□□ 0.29
SS18-209ENST00000578595 GPR139Q6DWJ6 353 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 PGBD2Q6P3X8 592 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 JAZF1Q86VZ6 243 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 OR52L1Q8NGH7 329 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 SLC7A6OSQ96CW6 309 aaPredicted RBP16.89■□□□□ 0.29
SS18-209ENST00000578595 SAMD8Q96LT4 415 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 FOXN4Q96NZ1 517 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 OR51B6Q9H340 312 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 SIAEQ9HAT2 523 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 UGT2A1Q9Y4X1 527 aa16.89■□□□□ 0.29
SS18-209ENST00000578595 MTORP42345 2549 aa16.88■□□□□ 0.29
SS18-209ENST00000578595 NDUFS7O75251 213 aa16.88■□□□□ 0.29
SS18-209ENST00000578595 PTP4A3O75365 173 aa16.88■□□□□ 0.29
SS18-209ENST00000578595 SERPINF1P36955 418 aa16.88■□□□□ 0.29
SS18-209ENST00000578595 RASSF2P50749 326 aa16.88■□□□□ 0.29
SS18-209ENST00000578595 ZNF133P52736 654 aaPredicted RBP16.88■□□□□ 0.29
SS18-209ENST00000578595 NUDT6P53370 316 aa16.88■□□□□ 0.29
SS18-209ENST00000578595 RAB35Q15286 201 aa16.88■□□□□ 0.29
SS18-209ENST00000578595 NRN1LQ496H8 165 aa16.88■□□□□ 0.29
SS18-209ENST00000578595 DPY19L2P2Q6ZN68 376 aa16.88■□□□□ 0.29
SS18-209ENST00000578595 ICA1LQ8NDH6 482 aa16.88■□□□□ 0.29
SS18-209ENST00000578595 SLC30A7Q8NEW0 376 aa16.88■□□□□ 0.29
SS18-209ENST00000578595 NMD3Q96D46 503 aaKnown RBP16.88■□□□□ 0.29
SS18-209ENST00000578595 GPX7Q96SL4 187 aaPredicted RBP16.88■□□□□ 0.29
SS18-209ENST00000578595 SYT4Q9H2B2 425 aa16.88■□□□□ 0.29
SS18-209ENST00000578595 BARX1Q9HBU1 254 aaPredicted RBP16.88■□□□□ 0.29
SS18-209ENST00000578595 NRIP3Q9NQ35 241 aa16.88■□□□□ 0.29
SS18-209ENST00000578595 SLC22A23A1A5C7 686 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 PRSS37A4D1T9 235 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 TRIM64A6NGJ6 449 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 TRIM64BA6NI03 449 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 AQP12BA6NM10 295 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 ACOT8O14734 319 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 SMAD7O15105 426 aaKnown RBP16.87■□□□□ 0.29
SS18-209ENST00000578595 CST1P01037 141 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 PTHP01270 115 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 IGHV4-39P01824 125 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 SERPINA5P05154 406 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 CCL2P13500 99 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 ZNF32P17041 273 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 CCNOP22674 350 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 LAP3P28838 519 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 APLNRP35414 380 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 THBS4P35443 961 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 FXYD6P3P58550 94 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 HGFACQ04756 655 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 TSPAN31Q12999 210 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 CLEC12BQ2HXU8 276 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 TBC1D28Q2M2D7 210 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 CLEC12AQ5QGZ9 265 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 C11orf71Q6IPW1 123 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 C1orf94Q6P1W5 598 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 PRSS57Q6UWY2 283 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 FAM122BQ7Z309 247 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 ADCK1Q86TW2 530 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 AQP12AQ8IXF9 295 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 ADGRG5Q8IZF4 528 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 LINC00471Q8N535 108 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 AQP11Q8NBQ7 271 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 NUP37Q8NFH4 326 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 CANT1Q8WVQ1 401 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 VRK1Q99986 396 aaPredicted RBP16.87■□□□□ 0.29
SS18-209ENST00000578595 TMUB1Q9BVT8 246 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 LRMDAQ9H2I8 198 aa16.87■□□□□ 0.29
SS18-209ENST00000578595 H7C1Q1 480 aa16.86■□□□□ 0.29
SS18-209ENST00000578595 SSX4O60224 188 aa16.86■□□□□ 0.29
SS18-209ENST00000578595 SLC16A7O60669 478 aa16.86■□□□□ 0.29
SS18-209ENST00000578595 FAM157BP0CG42 384 aa16.86■□□□□ 0.29
SS18-209ENST00000578595 PAX1P15863 534 aa16.86■□□□□ 0.29
SS18-209ENST00000578595 MSR1P21757 451 aa16.86■□□□□ 0.29
SS18-209ENST00000578595 GSSP48637 474 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms