RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 NAT6Q93015 286 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 ZNF681Q96N22 645 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 SDHAF2Q9NX18 166 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 FITM1A5D6W6 292 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 E9PI62 339 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 CCSO14618 274 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 TBX19O60806 448 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 ST6GAL1P15907 406 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 NME2P22392 152 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 NPY4RP50391 375 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 RPS18P62269 152 aaKnown RBP14.03□□□□□ -0.16
CIITA-204ENST00000570546 BTG2P78543 158 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 RPL18Q07020 188 aaKnown RBP14.03□□□□□ -0.16
CIITA-204ENST00000570546 TMEM240Q5SV17 173 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 RADILQ96JH8 1075 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 LOC107986453A0A1B0GWG9 222 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 A0A1B0GX78 115 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 TK1P04183 234 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 NKX6-1P78426 367 aaPredicted RBP14.03□□□□□ -0.16
CIITA-204ENST00000570546 LPCAT3Q6P1A2 487 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 FJX1Q86VR8 437 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 WDR34Q96EX3 536 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 SCPEP1Q9HB40 452 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 CD160O95971 181 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 HOXC8P31273 242 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 AFF3P51826 1226 aaKnown RBP14.03□□□□□ -0.16
CIITA-204ENST00000570546 MAP2K6P52564 334 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 ACSM1Q08AH1 577 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 RDH10Q8IZV5 341 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 LAT2Q9GZY6 243 aa14.03□□□□□ -0.16
CIITA-204ENST00000570546 AKR7A3O95154 331 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 OLFM2O95897 454 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 IGHA2P01877 340 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 EGR3Q06889 387 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 TMEM201Q5SNT2 666 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 ZNF684Q5T5D7 378 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 FAM27D1Q5T7N8 215 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 STAC2Q6ZMT1 411 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 LIX1LQ8IVB5 337 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 C16orf52Q8NHV5 167 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 PRDM7Q9NQW5 492 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 FAM212BQ9NTI7 297 aaPredicted RBP14.02□□□□□ -0.16
CIITA-204ENST00000570546 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.02□□□□□ -0.16
CIITA-204ENST00000570546 CCDC163A0A0D9SF12 145 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 NSA2O95478 260 aaKnown RBP14.02□□□□□ -0.16
CIITA-204ENST00000570546 FOSL2P15408 326 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 HMGA2P52926 109 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 KCNAB1Q14722 419 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 GABRG1Q8N1C3 465 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 TSSK2Q96PF2 358 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 SLC17A4Q9Y2C5 497 aa14.02□□□□□ -0.16
CIITA-204ENST00000570546 DDAH2O95865 285 aa14.02□□□□□ -0.17
CIITA-204ENST00000570546 CPT2P23786 658 aa14.02□□□□□ -0.17
CIITA-204ENST00000570546 SSR4P51571 173 aa14.02□□□□□ -0.17
CIITA-204ENST00000570546 ACKR1Q16570 336 aa14.02□□□□□ -0.17
CIITA-204ENST00000570546 FBXW12Q6X9E4 464 aa14.02□□□□□ -0.17
CIITA-204ENST00000570546 HINT2Q9BX68 163 aa14.02□□□□□ -0.17
CIITA-204ENST00000570546 DOCK5Q9H7D0 1870 aa14.02□□□□□ -0.17
CIITA-204ENST00000570546 TRAV1-2A0A0B4J238 106 aa14.02□□□□□ -0.17
CIITA-204ENST00000570546 PRAMEF25A6NGN4 478 aa14.02□□□□□ -0.17
CIITA-204ENST00000570546 OR7C1O76099 320 aaPredicted RBP14.02□□□□□ -0.17
CIITA-204ENST00000570546 EPXP11678 715 aa14.02□□□□□ -0.17
CIITA-204ENST00000570546 ZNF44P15621 663 aa14.02□□□□□ -0.17
CIITA-204ENST00000570546 PCBP4P57723 403 aaKnown RBP14.02□□□□□ -0.17
CIITA-204ENST00000570546 FKRPQ9H9S5 495 aa14.02□□□□□ -0.17
CIITA-204ENST00000570546 IGHV3-20A0A0C4DH32 117 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 ZNF728P0DKX0 622 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 PPT1P50897 306 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 GLYR1Q49A26 553 aaPredicted RBP14.01□□□□□ -0.17
CIITA-204ENST00000570546 FAM122CQ6P4D5 195 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 ZNF793Q6ZN11 406 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 AAED1Q7RTV5 226 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 ARIH2OSQ8N7S6 290 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 WDFY2Q96P53 400 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 IL20Q9NYY1 176 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 GPR137BO60478 399 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 DPP4P27487 766 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 APOBEC1P41238 236 aaKnown RBP14.01□□□□□ -0.17
CIITA-204ENST00000570546 GRB2P62993 217 aaKnown RBP14.01□□□□□ -0.17
CIITA-204ENST00000570546 YBX1P67809 324 aaKnown RBP14.01□□□□□ -0.17
CIITA-204ENST00000570546 FOXK1P85037 733 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 ECH1Q13011 328 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 C9orf135Q5VTT2 229 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 MRPL38Q96DV4 380 aaKnown RBP14.01□□□□□ -0.17
CIITA-204ENST00000570546 RNF170Q96K19 258 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 MRGPRX3Q96LB0 322 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.01□□□□□ -0.17
CIITA-204ENST00000570546 A0A1B0GUH1 482 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 ICOSLGO75144 302 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 MRPL33O75394 65 aaKnown RBP14.01□□□□□ -0.17
CIITA-204ENST00000570546 CD27P26842 260 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 EIF1P41567 113 aaKnown RBP14.01□□□□□ -0.17
CIITA-204ENST00000570546 PPICP45877 212 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 C21orf58P58505 322 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 AADACL4Q5VUY2 407 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 MARC2Q969Z3 335 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 CCL27Q9Y4X3 112 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 A6NCN8 305 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 BET1O15155 118 aa14.01□□□□□ -0.17
CIITA-204ENST00000570546 SIGLEC6O43699 453 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms