RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 ARIH2OSQ8N7S6 290 aa17.48■□□□□ 0.39
CLK3-225ENST00000569063 NEU4Q8WWR8 484 aaPredicted RBP17.48■□□□□ 0.39
CLK3-225ENST00000569063 NSMAFQ92636 917 aa17.48■□□□□ 0.39
CLK3-225ENST00000569063 PYURFQ96I23 114 aa17.48■□□□□ 0.39
CLK3-225ENST00000569063 DHRS1Q96LJ7 313 aa17.48■□□□□ 0.39
CLK3-225ENST00000569063 MRPL37Q9BZE1 423 aaKnown RBP17.48■□□□□ 0.39
CLK3-225ENST00000569063 KCNN2Q9H2S1 579 aa17.48■□□□□ 0.39
CLK3-225ENST00000569063 LOC390937A0A1W2PQ73 354 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 SLC22A23A1A5C7 686 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 VWC2LB2RUY7 222 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 TLX2O43763 284 aaPredicted RBP17.47■□□□□ 0.39
CLK3-225ENST00000569063 PTP4A3O75365 173 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 SNAP29O95721 258 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 ERCC1P07992 297 aaPredicted RBP17.47■□□□□ 0.39
CLK3-225ENST00000569063 CD14P08571 375 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 IGFBP1P08833 259 aaPredicted RBP17.47■□□□□ 0.39
CLK3-225ENST00000569063 ITGA2P17301 1181 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 OMPP47874 163 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 LIMS1P48059 325 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 PLP2Q04941 152 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 KRT72Q14CN4 511 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 FAM27BQ5VT28 67 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 C16orf89Q6UX73 402 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 ZCCHC24Q8N2G6 241 aaKnown RBP17.47■□□□□ 0.39
CLK3-225ENST00000569063 CLDN22Q8N7P3 220 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 OR1J2Q8NGS2 313 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 FAM46AQ96IP4 442 aaKnown RBP17.47■□□□□ 0.39
CLK3-225ENST00000569063 CCT8L2Q96SF2 557 aa17.47■□□□□ 0.39
CLK3-225ENST00000569063 FN1P02751 2386 aaKnown RBP17.47■□□□□ 0.39
CLK3-225ENST00000569063 CSPG4Q6UVK1 2322 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 IQCMA0A1B0GVH7 501 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 SH3PXD2BA1X283 911 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 SYNGR3O43761 229 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 ADRA2AP08913 450 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 MSX2P35548 267 aaPredicted RBP17.46■□□□□ 0.39
CLK3-225ENST00000569063 RPL4P36578 427 aaKnown RBP17.46■□□□□ 0.39
CLK3-225ENST00000569063 MNAT1P51948 309 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 ERVK-25P63136 954 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 SGCAQ16586 387 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 TBC1D28Q2M2D7 210 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 FGD3Q5JSP0 725 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 FOXL2NBQ6ZUU3 175 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 DEFB107AQ8IZN7 70 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 PAQR4Q8N4S7 273 aaPredicted RBP17.46■□□□□ 0.39
CLK3-225ENST00000569063 PIMREGQ9BSJ6 248 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 FUZQ9BT04 418 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 NDEL1Q9GZM8 345 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 DYNLRB1Q9NP97 96 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 CCNB1IP1Q9NPC3 277 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 GRHPRQ9UBQ7 328 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 SIGLEC7Q9Y286 467 aa17.46■□□□□ 0.39
CLK3-225ENST00000569063 TRBV4-1A0A0J9YWV2 114 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 DYNC1I1O14576 645 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 ARPC2O15144 300 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 AHCYL1O43865 530 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 DIRAS1O95057 198 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 CCL2P13500 99 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 USF1P22415 310 aaPredicted RBP17.45■□□□□ 0.38
CLK3-225ENST00000569063 NR4A2P43354 598 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 SMIM11AP58511 58 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 SEC23BQ15437 767 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 TMEM249Q2WGJ8 235 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 PABPC1L2AQ5JQF8 200 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 FAM122BQ7Z309 247 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 FITM2Q8N6M3 262 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 CPEB3Q8NE35 698 aaKnown RBP17.45■□□□□ 0.38
CLK3-225ENST00000569063 NSMCE2Q96MF7 247 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 FOXN4Q96NZ1 517 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 LRMDAQ9H2I8 198 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 MS4A5Q9H3V2 200 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 CDH20Q9HBT6 801 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 REV1Q9UBZ9 1251 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 ADAM18Q9Y3Q7 739 aa17.45■□□□□ 0.38
CLK3-225ENST00000569063 M0R233 179 aa17.44■□□□□ 0.38
CLK3-225ENST00000569063 NDUFB2O95178 105 aa17.44■□□□□ 0.38
CLK3-225ENST00000569063 DAOP14920 347 aa17.44■□□□□ 0.38
CLK3-225ENST00000569063 ZNF32P17041 273 aa17.44■□□□□ 0.38
CLK3-225ENST00000569063 GUCA1AP43080 201 aaPredicted RBP17.44■□□□□ 0.38
CLK3-225ENST00000569063 MXRA7P84157 204 aa17.44■□□□□ 0.38
CLK3-225ENST00000569063 HSF2Q03933 536 aa17.44■□□□□ 0.38
CLK3-225ENST00000569063 LRP11Q86VZ4 500 aa17.44■□□□□ 0.38
CLK3-225ENST00000569063 OR52J3Q8NH60 311 aa17.44■□□□□ 0.38
CLK3-225ENST00000569063 Q96M85 177 aa17.44■□□□□ 0.38
CLK3-225ENST00000569063 GPX7Q96SL4 187 aaPredicted RBP17.44■□□□□ 0.38
CLK3-225ENST00000569063 SYT3Q9BQG1 590 aa17.44■□□□□ 0.38
CLK3-225ENST00000569063 KRCC1Q9NPI7 259 aaPredicted RBP17.44■□□□□ 0.38
CLK3-225ENST00000569063 ADAM21Q9UKJ8 722 aa17.44■□□□□ 0.38
CLK3-225ENST00000569063 V9GYQ6 96 aa17.44■□□□□ 0.38
CLK3-225ENST00000569063 HIVEP2P31629 2446 aa17.44■□□□□ 0.38
CLK3-225ENST00000569063 CRLF1O75462 422 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 FAM107AO95990 144 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 CST2P09228 141 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 FAM157BP0CG42 384 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 STOMP27105 288 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 APEX1P27695 318 aaKnown RBP17.43■□□□□ 0.38
CLK3-225ENST00000569063 LAP3P28838 519 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 APLNRP35414 380 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 RAD52P43351 418 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 UCP2P55851 309 aa17.43■□□□□ 0.38
CLK3-225ENST00000569063 PSG4Q00888 419 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms