RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 UGT2A3Q6UWM9 527 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 ZNF704Q6ZNC4 412 aaPredicted RBP17.02■□□□□ 0.32
CLN3-225ENST00000566824 FOXL2NBQ6ZUU3 175 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 ADCK1Q86TW2 530 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 LNX2Q8N448 690 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 LRRC18Q8N456 261 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 CYB561A3Q8NBI2 242 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 NPEPL1Q8NDH3 523 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 KBTBD8Q8NFY9 601 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 OR52L1Q8NGH7 329 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 OR52E2Q8NGJ4 325 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 CENPNQ96H22 339 aaPredicted RBP17.02■□□□□ 0.32
CLN3-225ENST00000566824 OBP2BQ9NPH6 170 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 CRNNQ9UBG3 495 aaPredicted RBP17.02■□□□□ 0.32
CLN3-225ENST00000566824 OAZ3Q9UMX2 235 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 MAST4O15021 2626 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 CSMD1Q96PZ7 3565 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 CSMD2Q7Z408 3487 aa17.02■□□□□ 0.32
CLN3-225ENST00000566824 A0A1W2PPL8 197 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 SHISA9B4DS77 424 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 H3BN98 237 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 ABCD4O14678 606 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 IDH3BO43837 385 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 GOSR1O95249 250 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 MPZL1O95297 269 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 OR8G3PP0DMU2 310 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 OSMP13725 252 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 CBR1P16152 277 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 POU1F1P28069 291 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 MRPS34P82930 218 aaKnown RBP17.01■□□□□ 0.31
CLN3-225ENST00000566824 ACSM5Q6NUN0 579 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 ZFP1Q6P2D0 407 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 HIPK1Q86Z02 1210 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 ICA1LQ8NDH6 482 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 ZNRF4Q8WWF5 429 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 MS4A3Q96HJ5 214 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 GABARAPL1Q9H0R8 117 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 ESRP2Q9H6T0 727 aaKnown RBP17.01■□□□□ 0.31
CLN3-225ENST00000566824 EMC7Q9NPA0 242 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 NGBQ9NPG2 151 aa17.01■□□□□ 0.31
CLN3-225ENST00000566824 TMEFF2Q9UIK5 374 aaPredicted RBP17.01■□□□□ 0.31
CLN3-225ENST00000566824 COA3Q9Y2R0 106 aaPredicted RBP17.01■□□□□ 0.31
CLN3-225ENST00000566824 IGLV1-36A0A0B4J1U3 117 aa17■□□□□ 0.31
CLN3-225ENST00000566824 FAM171A2A8MVW0 826 aa17■□□□□ 0.31
CLN3-225ENST00000566824 AHCYL1O43865 530 aa17■□□□□ 0.31
CLN3-225ENST00000566824 IGLV1-44P01699 117 aa17■□□□□ 0.31
CLN3-225ENST00000566824 CD3EP07766 207 aa17■□□□□ 0.31
CLN3-225ENST00000566824 CECR9P0C854 216 aa17■□□□□ 0.31
CLN3-225ENST00000566824 NOS3P29474 1203 aa17■□□□□ 0.31
CLN3-225ENST00000566824 GIPRP48546 466 aa17■□□□□ 0.31
CLN3-225ENST00000566824 IDH3GP51553 393 aaPredicted RBP17■□□□□ 0.31
CLN3-225ENST00000566824 ARHGDIAP52565 204 aa17■□□□□ 0.31
CLN3-225ENST00000566824 NR1H2P55055 460 aa17■□□□□ 0.31
CLN3-225ENST00000566824 PGGHGQ32M88 737 aa17■□□□□ 0.31
CLN3-225ENST00000566824 TMEM236Q5W0B7 351 aa17■□□□□ 0.31
CLN3-225ENST00000566824 JAZF1Q86VZ6 243 aa17■□□□□ 0.31
CLN3-225ENST00000566824 OR6V1Q8N148 313 aa17■□□□□ 0.31
CLN3-225ENST00000566824 SLC37A3Q8NCC5 494 aa17■□□□□ 0.31
CLN3-225ENST00000566824 SLC38A2Q96QD8 506 aa17■□□□□ 0.31
CLN3-225ENST00000566824 ZNF556Q9HAH1 456 aa17■□□□□ 0.31
CLN3-225ENST00000566824 SIAEQ9HAT2 523 aa17■□□□□ 0.31
CLN3-225ENST00000566824 SRA1Q9HD15 236 aaKnown RBP17■□□□□ 0.31
CLN3-225ENST00000566824 RPRD1BQ9NQG5 326 aaKnown RBP17■□□□□ 0.31
CLN3-225ENST00000566824 RNF115Q9Y4L5 304 aa17■□□□□ 0.31
CLN3-225ENST00000566824 DSCAMO60469 2012 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 IGKV3-15P01624 115 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 MMP7P09237 267 aaPredicted RBP16.99■□□□□ 0.31
CLN3-225ENST00000566824 LAP3P28838 519 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 EPHA2P29317 976 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 CALCRP30988 508 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 RAB1AP62820 205 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 NPRL3Q12980 569 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 ENDOGQ14249 297 aaKnown RBP16.99■□□□□ 0.31
CLN3-225ENST00000566824 GINS1Q14691 196 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 GSG1Q2KHT4 349 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 TMEM108Q6UXF1 575 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 B3GLCTQ6Y288 498 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 ZDHHC13Q8IUH4 622 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 ZNF584Q8IVC4 421 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 OR2T33Q8NG76 320 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 TEX47Q8TBZ9 253 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 FNDC8Q8TC99 324 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 FBXO17Q96EF6 278 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 POLE4Q9NR33 117 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 PAPOLBQ9NRJ5 636 aaKnown RBP16.99■□□□□ 0.31
CLN3-225ENST00000566824 KIF17Q9P2E2 1029 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 B9D1Q9UPM9 204 aa16.99■□□□□ 0.31
CLN3-225ENST00000566824 ATP6V1G2-DDX39BF2Z307 99 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 MGRN1O60291 552 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 KHDRBS3O75525 346 aaKnown RBP16.98■□□□□ 0.31
CLN3-225ENST00000566824 NR2C1P13056 603 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 ZNF14P17017 642 aaPredicted RBP16.98■□□□□ 0.31
CLN3-225ENST00000566824 PTAFRP25105 342 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 PTDSS1P48651 473 aaKnown RBP16.98■□□□□ 0.31
CLN3-225ENST00000566824 CDK5Q00535 292 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 CRMP1Q14194 572 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 RAB39AQ14964 217 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 FAM27BQ5VT28 67 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 KDM4DQ6B0I6 523 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 SSX8Q7RTT4 187 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms