RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ACSM5Q6NUN0 579 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 DPY19L2P2Q6ZN68 376 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 RASSF6Q6ZTQ3 369 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 CCDC121Q6ZUS5 278 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 RRM2BQ7LG56 351 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 OR6V1Q8N148 313 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 LRRC18Q8N456 261 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 NPEPL1Q8NDH3 523 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 CPEB3Q8NE35 698 aaKnown RBP7.99□□□□□ -1.13
VPS35-206ENST00000565228 OR4K13Q8NH42 304 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 PYDC1Q8WXC3 89 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 ZNF570Q96NI8 536 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 ERMAPQ96PL5 475 aaPredicted RBP7.99□□□□□ -1.13
VPS35-206ENST00000565228 SLC38A2Q96QD8 506 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 NMNAT3Q96T66 252 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 PKP2Q99959 881 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 ALG12Q9BV10 488 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 NUAK2Q9H093 628 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 REEP1Q9H902 201 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 SMURF2Q9HAU4 748 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 SLC24A3Q9HC58 644 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 EMC7Q9NPA0 242 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 PDP1Q9P0J1 537 aaPredicted RBP7.99□□□□□ -1.13
VPS35-206ENST00000565228 TMCC3Q9ULS5 477 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 POFUT2Q9Y2G5 429 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 RNF115Q9Y4L5 304 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 CDH10Q9Y6N8 788 aa7.99□□□□□ -1.13
VPS35-206ENST00000565228 MAP1AP78559 2803 aaPredicted RBP7.98□□□□□ -1.13
VPS35-206ENST00000565228 ANK3Q12955 4377 aaKnown RBP7.98□□□□□ -1.13
VPS35-206ENST00000565228 IGHV2OR16-5A0A0B4J2B6 119 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 TMEM129A0AVI4 362 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 ARPC3O15145 178 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 GOSR1O95249 250 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 WNT11O96014 354 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 CD3EP07766 207 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 CLUP10909 449 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 CD79AP11912 226 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 ZNF35P13682 527 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 ZNF32P17041 273 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 LAP3P28838 519 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 NKX6-1P78426 367 aaPredicted RBP7.98□□□□□ -1.13
VPS35-206ENST00000565228 MRPS34P82930 218 aaKnown RBP7.98□□□□□ -1.13
VPS35-206ENST00000565228 NAAAQ02083 359 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 TGFBR3Q03167 851 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 CD47Q08722 323 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 TAF11Q15544 211 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 ATP6AP1Q15904 470 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 SLC36A3Q495N2 470 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 TMEM236Q5W0B7 351 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 C11orf71Q6IPW1 123 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 FAHD1Q6P587 224 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 CD300LDQ6UXZ3 194 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 ABHD12BQ7Z5M8 362 aaPredicted RBP7.98□□□□□ -1.13
VPS35-206ENST00000565228 CDK20Q8IZL9 346 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 CYB561A3Q8NBI2 242 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 SLC37A3Q8NCC5 494 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 SDR9C7Q8NEX9 313 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 AKR7LQ8NHP1 331 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 GIPC3Q8TF64 312 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 MUCL1Q96DR8 90 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 TSSK6Q9BXA6 273 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 WNT5BQ9H1J7 359 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 SEMA6AQ9H2E6 1030 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 MMADHCQ9H3L0 296 aaPredicted RBP7.98□□□□□ -1.13
VPS35-206ENST00000565228 POLE4Q9NR33 117 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 MRPL22Q9NWU5 206 aaKnown RBP7.98□□□□□ -1.13
VPS35-206ENST00000565228 DNAJB9Q9UBS3 223 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 TMEFF2Q9UIK5 374 aaPredicted RBP7.98□□□□□ -1.13
VPS35-206ENST00000565228 ITGB1BP2Q9UKP3 347 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 B9D1Q9UPM9 204 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 COA3Q9Y2R0 106 aaPredicted RBP7.98□□□□□ -1.13
VPS35-206ENST00000565228 MED13LQ71F56 2210 aa7.98□□□□□ -1.13
VPS35-206ENST00000565228 LOC100509620A0A075B734 347 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 ARRDC5A6NEK1 342 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 M0R129 80 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 OVOL3O00110 214 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 EBAG9O00559 213 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 GPRIN2O60269 458 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 SLC16A7O60669 478 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 ENTPD5O75356 428 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 TFP02787 698 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 APEHP13798 732 aaKnown RBP7.97□□□□□ -1.13
VPS35-206ENST00000565228 PTAFRP25105 342 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 POLR2IP36954 125 aaKnown RBP7.97□□□□□ -1.13
VPS35-206ENST00000565228 CDKN1AP38936 164 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 RPS27P42677 84 aaKnown RBP7.97□□□□□ -1.13
VPS35-206ENST00000565228 PTDSS1P48651 473 aaKnown RBP7.97□□□□□ -1.13
VPS35-206ENST00000565228 RASSF2P50749 326 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 NR1H2P55055 460 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 CDH11P55287 796 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 ERVS71-1P61550 626 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 RAB1AP62820 205 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 PSG4Q00888 419 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.97□□□□□ -1.13
VPS35-206ENST00000565228 NPRL3Q12980 569 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 SGCAQ16586 387 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 RSPO1Q2MKA7 263 aaPredicted RBP7.97□□□□□ -1.13
VPS35-206ENST00000565228 THEM4Q5T1C6 240 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 FAM27BQ5VT28 67 aa7.97□□□□□ -1.13
VPS35-206ENST00000565228 GPR139Q6DWJ6 353 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms