RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 RRM2BQ7LG56 351 aa15.82■□□□□ 0.12
CLN3-214ENST00000565140 DPPA2Q7Z7J5 298 aa15.82■□□□□ 0.12
CLN3-214ENST00000565140 LRP11Q86VZ4 500 aa15.82■□□□□ 0.12
CLN3-214ENST00000565140 FAM46AQ96IP4 442 aaKnown RBP15.82■□□□□ 0.12
CLN3-214ENST00000565140 FOXN4Q96NZ1 517 aa15.82■□□□□ 0.12
CLN3-214ENST00000565140 SYT3Q9BQG1 590 aa15.82■□□□□ 0.12
CLN3-214ENST00000565140 ALG12Q9BV10 488 aa15.82■□□□□ 0.12
CLN3-214ENST00000565140 RAB1BQ9H0U4 201 aa15.82■□□□□ 0.12
CLN3-214ENST00000565140 FZR1Q9UM11 496 aa15.82■□□□□ 0.12
CLN3-214ENST00000565140 ADAM18Q9Y3Q7 739 aa15.82■□□□□ 0.12
CLN3-214ENST00000565140 FAM32AQ9Y421 112 aaKnown RBP15.82■□□□□ 0.12
CLN3-214ENST00000565140 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.82■□□□□ 0.127e-9■■□□□ 13.5
CLN3-214ENST00000565140 MGRN1O60291 552 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 PTP4A3O75365 173 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 GMNNO75496 209 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 DCTN3O75935 186 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 SEMG1P04279 462 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 TP53P04637 393 aaPredicted RBP15.81■□□□□ 0.12
CLN3-214ENST00000565140 EVX1P49640 407 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 ATRQ13535 2644 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 CARTPTQ16568 116 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 TMEM249Q2WGJ8 235 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 FGD3Q5JSP0 725 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 SAMD4BQ5PRF9 694 aaKnown RBP15.81■□□□□ 0.12
CLN3-214ENST00000565140 THEM4Q5T1C6 240 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 ARIH2OSQ8N7S6 290 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 CPEB3Q8NE35 698 aaKnown RBP15.81■□□□□ 0.12
CLN3-214ENST00000565140 PYURFQ96I23 114 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 DHRS1Q96LJ7 313 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 RBP7Q96R05 134 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 CCT8L2Q96SF2 557 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 FUZQ9BT04 418 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 MYEF2Q9P2K5 600 aaKnown RBP15.81■□□□□ 0.12
CLN3-214ENST00000565140 SLC7A8Q9UHI5 535 aa15.81■□□□□ 0.12
CLN3-214ENST00000565140 H7C1C5 153 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 FAM157BP0CG42 384 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 APEX1P27695 318 aaKnown RBP15.8■□□□□ 0.12
CLN3-214ENST00000565140 RPL4P36578 427 aaKnown RBP15.8■□□□□ 0.12
CLN3-214ENST00000565140 OMPP47874 163 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 LIMS1P48059 325 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 LCN6P62502 163 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 PABPC1L2AQ5JQF8 200 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 PRIMA1Q86XR5 153 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 DEFB107AQ8IZN7 70 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 OR52J3Q8NH60 311 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 Q96M85 177 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 OR51B6Q9H340 312 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 TPK1Q9H3S4 243 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 DYNLRB1Q9NP97 96 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 YAE1D1Q9NRH1 226 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 MAGEL2Q9UJ55 1249 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 FBXO9Q9UK97 447 aaPredicted RBP15.8■□□□□ 0.12
CLN3-214ENST00000565140 ADAM21Q9UKJ8 722 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 TMEM5Q9Y2B1 443 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 SVEP1Q4LDE5 3571 aa15.8■□□□□ 0.12
CLN3-214ENST00000565140 LOC390937A0A1W2PQ73 354 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 A6NIZ1 184 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 ARPC2O15144 300 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 SCG5P05408 212 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 CD14P08571 375 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 DAOP14920 347 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 ZNF32P17041 273 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 USF1P22415 310 aaPredicted RBP15.79■□□□□ 0.12
CLN3-214ENST00000565140 ALDH3B1P43353 468 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 NR4A2P43354 598 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 RAP1BP61224 184 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 RPS23P62266 143 aaKnown RBP15.79■□□□□ 0.12
CLN3-214ENST00000565140 RAP1AP62834 184 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 MAD2L1BPQ15013 274 aaPredicted RBP15.79■□□□□ 0.12
CLN3-214ENST00000565140 FAM27BQ5VT28 67 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 FAM205BPQ63HN1 556 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 FAM122BQ7Z309 247 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 FITM2Q8N6M3 262 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 NEU4Q8WWR8 484 aaPredicted RBP15.79■□□□□ 0.12
CLN3-214ENST00000565140 GPA33Q99795 319 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 C1orf198Q9H425 327 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 CDH20Q9HBT6 801 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 CCNB1IP1Q9NPC3 277 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 GRHPRQ9UBQ7 328 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 REV1Q9UBZ9 1251 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 SIGLEC7Q9Y286 467 aa15.79■□□□□ 0.12
CLN3-214ENST00000565140 IQCMA0A1B0GVH7 501 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 SLC22A23A1A5C7 686 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 NDUFS8O00217 210 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 SYNGR3O43761 229 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 TLX2O43763 284 aaPredicted RBP15.78■□□□□ 0.12
CLN3-214ENST00000565140 CRLF1O75462 422 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 SNAP29O95721 258 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 PTHP01270 115 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 NR2C1P13056 603 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 LAP3P28838 519 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 FXYD6P3P58550 94 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 ERVS71-1P61550 626 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 PSG4Q00888 419 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 HSF2Q03933 536 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 PLP2Q04941 152 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 GGTLC2Q14390 218 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 TBC1D28Q2M2D7 210 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 MESTQ5EB52 335 aa15.78■□□□□ 0.12
CLN3-214ENST00000565140 THSD4Q6ZMP0 1018 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms