RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 CTSFQ9UBX1 484 aa12.17□□□□□ -0.46
CLK3-215ENST00000564353 VDAC3Q9Y277 283 aa12.17□□□□□ -0.46
CLK3-215ENST00000564353 THADAQ6YHU6 1953 aa12.17□□□□□ -0.46
CLK3-215ENST00000564353 SOX1O00570 391 aaPredicted RBP12.16□□□□□ -0.46
CLK3-215ENST00000564353 ARPC5O15511 151 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 DDAH2O95865 285 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 GTF2F2P13984 249 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 CXCL2P19875 107 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 SPOCK1Q08629 439 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 DMWDQ09019 674 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 ESCO2Q56NI9 601 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 ZNF721Q8TF20 911 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 MIB2Q96AX9 1013 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 MRPL48Q96GC5 212 aaKnown RBP12.16□□□□□ -0.46
CLK3-215ENST00000564353 KLHL15Q96M94 604 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 ATG5Q9H1Y0 275 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 ZNF224Q9NZL3 707 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 SCP2D1Q9UJQ7 156 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 CDV3Q9UKY7 258 aaKnown RBP12.16□□□□□ -0.46
CLK3-215ENST00000564353 ANKRD20A5PA0PJZ0 165 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 M0QYG6 137 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 M0R233 179 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 CD3DP04234 171 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 APEHP13798 732 aaKnown RBP12.16□□□□□ -0.46
CLK3-215ENST00000564353 PPICP45877 212 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 ARRB1P49407 418 aaPredicted RBP12.16□□□□□ -0.46
CLK3-215ENST00000564353 INSM1Q01101 510 aaPredicted RBP12.16□□□□□ -0.46
CLK3-215ENST00000564353 HSF2Q03933 536 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 ELOCQ15369 112 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.16□□□□□ -0.46
CLK3-215ENST00000564353 LRFN4Q6PJG9 635 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 C17orf107Q6ZR85 190 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 FGD2Q7Z6J4 655 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 TMED4Q7Z7H5 227 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 FAM71CQ8NEG0 241 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 OR10Z1Q8NGY1 313 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 OR1L3Q8NH93 324 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 GPR148Q8TDV2 347 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 SORCS2Q96PQ0 1159 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 DPYSL5Q9BPU6 564 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 NUDT22Q9BRQ3 303 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 GLTPQ9NZD2 209 aa12.16□□□□□ -0.46
CLK3-215ENST00000564353 FXYD6-FXYD2A0A087WZ82 144 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 SUSD5O60279 629 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 CD38P28907 300 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 C2orf76Q3KRA6 126 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 DCAF12L2Q5VW00 463 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 ASPHD2Q6ICH7 369 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 ALKAL2Q6UX46 152 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 ZNF417Q8TAU3 575 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 ADIPOR1Q96A54 375 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 GPX7Q96SL4 187 aaPredicted RBP12.15□□□□□ -0.46
CLK3-215ENST00000564353 ZNF587Q96SQ5 575 aaPredicted RBP12.15□□□□□ -0.46
CLK3-215ENST00000564353 EMC6Q9BV81 110 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 FXYD6Q9H0Q3 95 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 TMEM185BQ9H7F4 350 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 MRPL22Q9NWU5 206 aaKnown RBP12.15□□□□□ -0.46
CLK3-215ENST00000564353 TAS2R4Q9NYW5 299 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 COA3Q9Y2R0 106 aaPredicted RBP12.15□□□□□ -0.46
CLK3-215ENST00000564353 RNF215Q9Y6U7 377 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 FREM3P0C091 2139 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 H3BML4 177 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 SHOXO15266 292 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 RBBP9O75884 186 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 NUDT1P36639 197 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 CSRP2Q16527 193 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 EEF1A1P5Q5VTE0 462 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 KRT77Q7Z794 578 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 ZNF227Q86WZ6 799 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 SMRP1Q8NCR6 262 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 LMAN1LQ9HAT1 526 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 MED29Q9NX70 200 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 PIPOXQ9P0Z9 390 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 MOKQ9UQ07 419 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 FARSAQ9Y285 508 aaKnown RBP12.15□□□□□ -0.46
CLK3-215ENST00000564353 LRP4O75096 1905 aa12.15□□□□□ -0.46
CLK3-215ENST00000564353 IGHV1OR15-9A0A0B4J2B8 117 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 ACOT7O00154 380 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 GOSR2O14653 212 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 ZNF354AO60765 605 aaPredicted RBP12.15□□□□□ -0.47
CLK3-215ENST00000564353 ABCD3P28288 659 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 H2BFSP57053 126 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 CFHR1Q03591 330 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 EIF2B1Q14232 305 aaKnown RBP12.15□□□□□ -0.47
CLK3-215ENST00000564353 UBXN2BQ14CS0 331 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 EBPQ15125 230 aaKnown RBP12.15□□□□□ -0.47
CLK3-215ENST00000564353 HACD4Q5VWC8 232 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 C11orf88Q6PI97 169 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 GLDNQ6ZMI3 551 aaPredicted RBP12.15□□□□□ -0.47
CLK3-215ENST00000564353 RTN4RL2Q86UN3 420 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 FAM46BQ96A09 425 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 ARL5BQ96KC2 179 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 C4orf45Q96LM5 186 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 SLC19A3Q9BZV2 496 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 C8orf33Q9H7E9 229 aaPredicted RBP12.15□□□□□ -0.47
CLK3-215ENST00000564353 CENPMQ9NSP4 180 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 EMC9Q9Y3B6 208 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 RTTNQ86VV8 2226 aa12.15□□□□□ -0.47
CLK3-215ENST00000564353 CTDSPLO15194 276 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms