RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 OR4A8P0C604 315 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 HOXB6P17509 224 aaKnown RBP11.6□□□□□ -0.55
CLK3-213ENST00000563842 ATP6V1B2P21281 511 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 NR4A1P22736 598 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 SDHAP31040 664 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 RPS6KA3P51812 740 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 RPS23P62266 143 aaKnown RBP11.6□□□□□ -0.55
CLK3-213ENST00000563842 HGFACQ04756 655 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 TRAP1Q12931 704 aaKnown RBP11.6□□□□□ -0.55
CLK3-213ENST00000563842 RAB39AQ14964 217 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 SEC23BQ15437 767 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 EFNB3Q15768 340 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 SGCAQ16586 387 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 VHLLQ6RSH7 139 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 SMARCD3Q6STE5 483 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 DPY19L2P2Q6ZN68 376 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 MYPOPQ86VE0 399 aaPredicted RBP11.6□□□□□ -0.55
CLK3-213ENST00000563842 LRRC18Q8N456 261 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 GNPDA2Q8TDQ7 276 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 NSMAFQ92636 917 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 NMD3Q96D46 503 aaKnown RBP11.6□□□□□ -0.55
CLK3-213ENST00000563842 WACQ9BTA9 647 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 SEC61A2Q9H9S3 476 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 NRIP3Q9NQ35 241 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 CMAHPQ9Y471 501 aa11.6□□□□□ -0.55
CLK3-213ENST00000563842 ZNF469Q96JG9 3925 aaPredicted RBP11.6□□□□□ -0.55
CLK3-213ENST00000563842 VPS13CQ709C8 3753 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 H7C1Q1 480 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 TNFRSF11BO00300 401 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 IGHV4-39P01824 125 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 ZNF35P13682 527 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 APEHP13798 732 aaKnown RBP11.59□□□□□ -0.55
CLK3-213ENST00000563842 FPR3P25089 353 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 THBS4P35443 961 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 MAGEA2P43356 314 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 HMGA2P52926 109 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 NUDT6P53370 316 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 DSCR9P59020 149 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 PCBD1P61457 104 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 HSF2Q03933 536 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 FMODQ06828 376 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 SNTB2Q13425 540 aaKnown RBP11.59□□□□□ -0.55
CLK3-213ENST00000563842 ADIPOQQ15848 244 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 SWI5Q1ZZU3 235 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 TBC1D28Q2M2D7 210 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 FAM27BQ5VT28 67 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 FAM122BQ7Z309 247 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 ZER1Q7Z7L7 766 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 ADCK1Q86TW2 530 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 ALDH16A1Q8IZ83 802 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 MS4A3Q96HJ5 214 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 Q96M85 177 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 CDH20Q9HBT6 801 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 SLC7A8Q9UHI5 535 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 ADAM18Q9Y3Q7 739 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 FKBP7Q9Y680 259 aa11.59□□□□□ -0.55
CLK3-213ENST00000563842 TCRBV5S2A0A599 114 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 PRSS37A4D1T9 235 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 IMPA2O14732 288 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 SSX4O60224 188 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 UBOX5O94941 541 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 ERCC1P07992 297 aaPredicted RBP11.58□□□□□ -0.56
CLK3-213ENST00000563842 CST2P09228 141 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 CSF3P09919 207 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 PATE4P0C8F1 98 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 SLC6A6P31641 620 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 CDAP32320 146 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 APLNRP35414 380 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 GLRXP35754 106 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 EVX1P49640 407 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 RASSF2P50749 326 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 EFNA4P52798 201 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 MS4A2Q01362 244 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 TSPAN31Q12999 210 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 KRR1Q13601 381 aaKnown RBP11.58□□□□□ -0.56
CLK3-213ENST00000563842 GK3PQ14409 553 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 MST1LQ2TV78 715 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 KRT80Q6KB66 452 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 RPL13AP3Q6NVV1 102 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 C1orf94Q6P1W5 598 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 CLEC2AQ6UVW9 174 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 UNQ6126/PRO20091Q6UXV3 157 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 SYT9Q86SS6 491 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 SLC30A7Q8NEW0 376 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 FGFBP3Q8TAT2 258 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 NABP1Q96AH0 204 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 CCDC124Q96CT7 223 aaKnown RBP11.58□□□□□ -0.56
CLK3-213ENST00000563842 COX4I2Q96KJ9 171 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 RHNO1Q9BSD3 238 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 PLK3Q9H4B4 646 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 GDF2Q9UK05 429 aaPredicted RBP11.58□□□□□ -0.56
CLK3-213ENST00000563842 UGT2A1Q9Y4X1 527 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 IER3IP1Q9Y5U9 82 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 LYVE1Q9Y5Y7 322 aa11.58□□□□□ -0.56
CLK3-213ENST00000563842 CR1P17927 2039 aa11.57□□□□□ -0.56
CLK3-213ENST00000563842 IGKV1D-43A0A0B4J1Z2 117 aa11.57□□□□□ -0.56
CLK3-213ENST00000563842 TEX13CA0A0J9YWL9 993 aa11.57□□□□□ -0.56
CLK3-213ENST00000563842 A0A1W2PPL8 197 aa11.57□□□□□ -0.56
CLK3-213ENST00000563842 TRIM64A6NGJ6 449 aa11.57□□□□□ -0.56
CLK3-213ENST00000563842 TRIM64BA6NI03 449 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms