RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 TIMM23BQ5SRD1 257 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 FAM205BPQ63HN1 556 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 RPL13AP3Q6NVV1 102 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 ANKRD16Q6P6B7 361 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 FOXL2NBQ6ZUU3 175 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 ZNF771Q7L3S4 317 aaPredicted RBP8.54□□□□□ -1.04
CLK3-208ENST00000562626 OR6V1Q8N148 313 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 PARP8Q8N3A8 854 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 SLC22A24Q8N4F4 322 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 OR52L1Q8NGH7 329 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 OR51L1Q8NGJ5 315 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 OR9Q1Q8NGQ5 310 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 TEX47Q8TBZ9 253 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 FAM222BQ8WU58 562 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 NRGNQ92686 78 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 DACH2Q96NX9 599 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 MBOAT4Q96T53 435 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 RBM4Q9BWF3 364 aaKnown RBP8.54□□□□□ -1.04
CLK3-208ENST00000562626 HDHD5Q9BXW7 423 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 NMNAT2Q9BZQ4 307 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 OR10A4Q9H209 315 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 RERGLQ9H628 205 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 SLC25A19Q9HC21 320 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 EMC7Q9NPA0 242 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 B3GAT2Q9NPZ5 323 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 RPRD1BQ9NQG5 326 aaKnown RBP8.54□□□□□ -1.04
CLK3-208ENST00000562626 B3GNT2Q9NY97 397 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 KIF17Q9P2E2 1029 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 B9D1Q9UPM9 204 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 POFUT2Q9Y2G5 429 aa8.54□□□□□ -1.04
CLK3-208ENST00000562626 COA3Q9Y2R0 106 aaPredicted RBP8.54□□□□□ -1.04
CLK3-208ENST00000562626 POLQO75417 2590 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 ARPC4-TTLL3A0A0A6YYG9 625 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.53□□□□□ -1.04
CLK3-208ENST00000562626 A0A1W2PPL8 197 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 A6NNC1 897 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 XKRYO14609 159 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 SURF4O15260 269 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 MGRN1O60291 552 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 SLC16A7O60669 478 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 HRGP04196 525 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 IGFBP5P24593 272 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 LAP3P28838 519 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 GRK5P34947 590 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 ZNF83P51522 516 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 ARHGDIAP52565 204 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 SH3BGRP55822 239 aaPredicted RBP8.53□□□□□ -1.04
CLK3-208ENST00000562626 MRPS34P82930 218 aaKnown RBP8.53□□□□□ -1.04
CLK3-208ENST00000562626 PIGFQ07326 219 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 ENDOGQ14249 297 aaKnown RBP8.53□□□□□ -1.04
CLK3-208ENST00000562626 DAZAP2Q15038 168 aaPredicted RBP8.53□□□□□ -1.04
CLK3-208ENST00000562626 ZIK1Q3SY52 487 aaPredicted RBP8.53□□□□□ -1.04
CLK3-208ENST00000562626 THEM4Q5T1C6 240 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 OR7E24Q6IFN5 339 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 HDDC2Q7Z4H3 204 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 ABHD12BQ7Z5M8 362 aaPredicted RBP8.53□□□□□ -1.04
CLK3-208ENST00000562626 ADCK1Q86TW2 530 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 MDP1Q86V88 176 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 ZNF584Q8IVC4 421 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 LRRC18Q8N456 261 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 BBS1Q8NFJ9 593 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 OR2T33Q8NG76 320 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 NRG4Q8WWG1 115 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 NEUROG1Q92886 237 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 STMN2Q93045 179 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 FBXO17Q96EF6 278 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 PIK3IP1Q96FE7 263 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 PLPPR2Q96GM1 343 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 RBP7Q96R05 134 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 GABARAPL3Q9BY60 117 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 ZNF556Q9HAH1 456 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 SRA1Q9HD15 236 aaKnown RBP8.53□□□□□ -1.04
CLK3-208ENST00000562626 HINT3Q9NQE9 182 aaKnown RBP8.53□□□□□ -1.04
CLK3-208ENST00000562626 MRPL22Q9NWU5 206 aaKnown RBP8.53□□□□□ -1.04
CLK3-208ENST00000562626 USE1Q9NZ43 259 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 STX18Q9P2W9 335 aaKnown RBP8.53□□□□□ -1.04
CLK3-208ENST00000562626 KCNN3Q9UGI6 736 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 NDRG3Q9UGV2 375 aa8.53□□□□□ -1.04
CLK3-208ENST00000562626 IGHV1-18A0A0C4DH31 117 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 ZAR1LA6NP61 321 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 IDH3BO43837 385 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 PRKYO43930 277 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 CTAG2O75638 210 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 SNAP29O95721 258 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 TFP02787 698 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 MMP7P09237 267 aaPredicted RBP8.52□□□□□ -1.05
CLK3-208ENST00000562626 PPP3CBP16298 524 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 RPS27P42677 84 aaKnown RBP8.52□□□□□ -1.05
CLK3-208ENST00000562626 ALDH3A2P51648 485 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 TGFBR3Q03167 851 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 TLE4Q04727 773 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 BSPH1Q075Z2 132 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 NPRL3Q12980 569 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 SGCAQ16586 387 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 LRRC36Q1X8D7 754 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 NCMAPQ5T1S8 102 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 LINC01590Q5TEZ4 76 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 SLX4IPQ5VYV7 408 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 C12orf73Q69YU5 71 aa8.52□□□□□ -1.05
CLK3-208ENST00000562626 SLC27A4Q6P1M0 643 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 617.5 ms