RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 MRPL24Q96A35 216 aaKnown RBP13.5□□□□□ -0.25
VPS39-203ENST00000561797 PYURFQ96I23 114 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 SYT3Q9BQG1 590 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 MRPL37Q9BZE1 423 aaKnown RBP13.5□□□□□ -0.25
VPS39-203ENST00000561797 SIAEQ9HAT2 523 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 SMURF2Q9HAU4 748 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 CDH20Q9HBT6 801 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 CCNB1IP1Q9NPC3 277 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 TMEM5Q9Y2B1 443 aa13.5□□□□□ -0.25
VPS39-203ENST00000561797 NSD1Q96L73 2696 aaPredicted RBP13.5□□□□□ -0.25
VPS39-203ENST00000561797 NAV3Q8IVL0 2385 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 A0A096LNT2 108 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 TRBV4-1A0A0J9YWV2 114 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 A0A1W2PRQ8 180 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 H7C1C5 153 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 DYNC1I1O14576 645 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 ARPC2O15144 300 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 ADRA2AP08913 450 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 MMP7P09237 267 aaPredicted RBP13.49□□□□□ -0.25
VPS39-203ENST00000561797 FAM157BP0CG42 384 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 ZNF26P17031 533 aaPredicted RBP13.49□□□□□ -0.25
VPS39-203ENST00000561797 APEX1P27695 318 aaKnown RBP13.49□□□□□ -0.25
VPS39-203ENST00000561797 RPS23P62266 143 aaKnown RBP13.49□□□□□ -0.25
VPS39-203ENST00000561797 LCN6P62502 163 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 HSF2Q03933 536 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 PLP2Q04941 152 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 DGCR6Q14129 220 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 SEC23BQ15437 767 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 FXNQ16595 210 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 THEM4Q5T1C6 240 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 FAM205BPQ63HN1 556 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 LRP11Q86VZ4 500 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 ARIH2OSQ8N7S6 290 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 ZNF519Q8TB69 540 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 NABP1Q96AH0 204 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 Q96M85 177 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 NSMCE2Q96MF7 247 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 YAE1D1Q9NRH1 226 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 NDE1Q9NXR1 346 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 GRHPRQ9UBQ7 328 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 SLC7A8Q9UHI5 535 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 FBXO9Q9UK97 447 aaPredicted RBP13.49□□□□□ -0.25
VPS39-203ENST00000561797 AURKCQ9UQB9 309 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 ADAM18Q9Y3Q7 739 aa13.49□□□□□ -0.25
VPS39-203ENST00000561797 HIVEP2P31629 2446 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 A0A1W2PPL8 197 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 B2RBV5 119 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 PTHP01270 115 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 ERCC1P07992 297 aaPredicted RBP13.48□□□□□ -0.25
VPS39-203ENST00000561797 CD14P08571 375 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 ZNF32P17041 273 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 ITGA2P17301 1181 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 SPIBQ01892 262 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 LOXL1Q08397 574 aaPredicted RBP13.48□□□□□ -0.25
VPS39-203ENST00000561797 TBC1D28Q2M2D7 210 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 PABPC1L2AQ5JQF8 200 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 FITM2Q8N6M3 262 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 CPEB3Q8NE35 698 aaKnown RBP13.48□□□□□ -0.25
VPS39-203ENST00000561797 OR1J2Q8NGS2 313 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 AKR7LQ8NHP1 331 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 FNDC8Q8TC99 324 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 MCUR1Q96AQ8 359 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 FOXN4Q96NZ1 517 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 PIMREGQ9BSJ6 248 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 NDEL1Q9GZM8 345 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 TPK1Q9H3S4 243 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 C1orf198Q9H425 327 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 DUSP13Q9UII6 198 aa13.48□□□□□ -0.25
VPS39-203ENST00000561797 LOC390937A0A1W2PQ73 354 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 XKRYO14609 159 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 SYNGR3O43761 229 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 CD5LO43866 347 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 MGRN1O60291 552 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 PTP4A3O75365 173 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 NDUFB2O95178 105 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 GADD45GO95257 159 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 SEMG1P04279 462 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 LCKP06239 509 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 IGFBP1P08833 259 aaPredicted RBP13.47□□□□□ -0.25
VPS39-203ENST00000561797 DAOP14920 347 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 USF1P22415 310 aaPredicted RBP13.47□□□□□ -0.25
VPS39-203ENST00000561797 CCNOP22674 350 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 LAP3P28838 519 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 APLNRP35414 380 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 GUCA1AP43080 201 aaPredicted RBP13.47□□□□□ -0.25
VPS39-203ENST00000561797 OMPP47874 163 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 GGTLC2Q14390 218 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 MAD2L1BPQ15013 274 aaPredicted RBP13.47□□□□□ -0.25
VPS39-203ENST00000561797 KRTAP21-3Q3LHN1 58 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 IQCCQ4KMZ1 466 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 RGS7BPQ6MZT1 257 aaPredicted RBP13.47□□□□□ -0.25
VPS39-203ENST00000561797 ICA1LQ8NDH6 482 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 NEU4Q8WWR8 484 aaPredicted RBP13.47□□□□□ -0.25
VPS39-203ENST00000561797 RASD2Q96D21 266 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 NSL1Q96IY1 281 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 RSRC1Q96IZ7 334 aaKnown RBP13.47□□□□□ -0.25
VPS39-203ENST00000561797 DHRS1Q96LJ7 313 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 ZNF570Q96NI8 536 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 LRMDAQ9H2I8 198 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 MYOZ1Q9NP98 299 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms