RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CRYBA2P53672 197 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 C21orf58P58505 322 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 MVKQ03426 396 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 POU4F2Q12837 409 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 HNRNPA0Q13151 305 aaKnown RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 MRPL49Q13405 166 aaKnown RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 ARFRP1Q13795 201 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 NKPD1Q17RQ9 610 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 TMEM44Q2T9K0 475 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 PLEKHN1Q494U1 663 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 TRIQKQ629K1 86 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 FAM131AQ6UXB0 335 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 FAM109AQ8N4B1 249 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 WDSUB1Q8N9V3 476 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 NFAM1Q8NET5 270 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 KBTBD8Q8NFY9 601 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 ZBTB8AQ96BR9 441 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 PAPOLGQ9BWT3 736 aaKnown RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 ANKRD60Q9BZ19 345 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 BCL2L14Q9BZR8 327 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 NARFLQ9H6Q4 476 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 FKRPQ9H9S5 495 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 ACOXLQ9NUZ1 547 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 TMEFF2Q9UIK5 374 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 KLHL21Q9UJP4 597 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 ING4Q9UNL4 249 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 B3GALT5Q9Y2C3 310 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 NCR1O76036 304 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 MT-ATP6P00846 226 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 TMEM225BP0DP42 221 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 GCH1P30793 250 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 SOX18P35713 384 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 RAB25P57735 213 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 ARF1P84077 181 aaKnown RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 EMX1Q04741 257 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 PLPPR5Q32ZL2 321 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 ATAD3CQ5T2N8 411 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 ARMC4Q5T2S8 1044 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 ATG4DQ86TL0 474 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 KIF18BQ86Y91 864 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 PRR18Q8N4B5 295 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 C19orf18Q8NEA5 215 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 DEFB108BQ8NET1 73 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 ABHD4Q8TB40 342 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 SNRNP27Q8WVK2 155 aaKnown RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 LRRC46Q96FV0 321 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 HRASLS5Q96KN8 279 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 RNF167Q9H6Y7 350 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 TREM2Q9NZC2 230 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 CHCHD2Q9Y6H1 151 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 DSPP15924 2871 aaKnown RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 DENND4AQ7Z401 1863 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 KMT2EQ8IZD2 1858 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 NAV2Q8IVL1 2488 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 PRSS37A4D1T9 235 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 K7EM74 188 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 CCRL2O00421 344 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 DVL2O14641 736 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 DHHO43323 396 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 IDH3BO43837 385 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 FADS1O60427 444 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 SLC2A5P22732 501 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 PAX7P23759 505 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 CRHBPP24387 322 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 TGFBR1P36897 503 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 TNFSF10P50591 281 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 TEKQ02763 1124 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 MALLQ13021 153 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 HIKESHIQ53FT3 197 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 LIPNQ5VXI9 398 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 PIP4P1Q86T03 277 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 CXorf67Q86X51 503 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 OR6V1Q8N148 313 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 OR9K2Q8NGE7 335 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 OR5AK2Q8NH90 309 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 OR2AE1Q8NHA4 323 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 PAQR8Q8TEZ7 354 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 DVL3Q92997 716 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 PIGTQ969N2 578 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 CPNE4Q96A23 557 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 LGALS12Q96DT0 336 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 FBXO17Q96EF6 278 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 KCTD7Q96MP8 289 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 OXGR1Q96P68 337 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 C1orf198Q9H425 327 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 BAIAP2Q9UQB8 552 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 EXOSC1Q9Y3B2 195 aaKnown RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 HDGFL3Q9Y3E1 203 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 CENPEQ02224 2701 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 USP9YO00507 2555 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 HEATR1Q9H583 2144 aaKnown RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 A0A1W2PQL4 384 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 PLSCR5A0PG75 271 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 SGCEO43556 437 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 PFDN1O60925 122 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 APOA1P02647 267 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 HLA-DPB1P04440 258 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 GRPP07492 148 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 TMIGD3P0DMS9 266 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-209ENST00000560637 APEX1P27695 318 aaKnown RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms