RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 TTYH2Q9BSA4 534 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 SF3B5Q9BWJ5 86 aaKnown RBP11.3□□□□□ -0.6
USP3-213ENST00000559711 SRXN1Q9BYN0 137 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 ZNF552Q9H707 407 aaPredicted RBP11.3□□□□□ -0.6
USP3-213ENST00000559711 KLF13Q9Y2Y9 288 aaPredicted RBP11.3□□□□□ -0.6
USP3-213ENST00000559711 DOCK10Q96BY6 2186 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 EML6Q6ZMW3 1958 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 A6NL46 340 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 ZNF726A6NNF4 738 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 H0YC42 278 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 J3QRK9 145 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 TAF4O00268 1085 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 CTDSP2O14595 271 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 DVL2O14641 736 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 CASKO14936 926 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 AQP8O94778 261 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 GLSO94925 669 aaPredicted RBP11.3□□□□□ -0.6
USP3-213ENST00000559711 MPZL1O95297 269 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 WT1P19544 449 aaPredicted RBP11.3□□□□□ -0.6
USP3-213ENST00000559711 S100A5P33763 92 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 ETV6P41212 452 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 CARD18P57730 90 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 CLRN1P58418 232 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 HNRNPA0Q13151 305 aaKnown RBP11.3□□□□□ -0.6
USP3-213ENST00000559711 CAMK2DQ13557 499 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 ALKBH1Q13686 389 aaKnown RBP11.3□□□□□ -0.6
USP3-213ENST00000559711 MEP1BQ16820 701 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 FDX2Q6P4F2 183 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 SLC25A47Q6Q0C1 308 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 PAMR1Q6UXH9 720 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 UNQ9370/PRO34162Q6UXP9 181 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 CEACAM19Q7Z692 300 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 ZNF679Q8IYX0 411 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 OR2V1Q8NHB1 315 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 PHYHIPQ92561 330 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 MAP6Q96JE9 813 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 UCN2Q96RP3 112 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 KCNS3Q9BQ31 491 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 TTTY12Q9BZ98 90 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 PPIL3Q9H2H8 161 aaKnown RBP11.3□□□□□ -0.6
USP3-213ENST00000559711 QPCTLQ9NXS2 382 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 SLCO1C1Q9NYB5 712 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 ING1Q9UK53 422 aaPredicted RBP11.3□□□□□ -0.6
USP3-213ENST00000559711 IKZF2Q9UKS7 526 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 B3GNT3Q9Y2A9 372 aa11.3□□□□□ -0.6
USP3-213ENST00000559711 KLRC4-KLRK1H3BQV0 150 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 EIF1AYO14602 144 aaKnown RBP11.29□□□□□ -0.6
USP3-213ENST00000559711 SMAD9O15198 467 aaKnown RBP11.29□□□□□ -0.6
USP3-213ENST00000559711 TLX3O43711 291 aaPredicted RBP11.29□□□□□ -0.6
USP3-213ENST00000559711 GATBO75879 557 aaKnown RBP11.29□□□□□ -0.6
USP3-213ENST00000559711 SPARCP09486 303 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 PRKAR1AP10644 381 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 ZNF823P16415 610 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 ENPP1P22413 925 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 SUCLG1P53597 346 aaKnown RBP11.29□□□□□ -0.6
USP3-213ENST00000559711 CLDN15P56746 228 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 CLDN17P56750 224 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 CLN3Q13286 438 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 ZMAT1Q5H9K5 638 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 OTPQ5XKR4 325 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 HBMQ6B0K9 141 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 KCTD18Q6PI47 426 aaPredicted RBP11.29□□□□□ -0.6
USP3-213ENST00000559711 TPRA1Q86W33 373 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 ZIC4Q8N9L1 334 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 OR9K2Q8NGE7 335 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 PDCD1LG2Q9BQ51 273 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 ABHD6Q9BV23 337 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 SMURF1Q9HCE7 757 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 FRRS1LQ9P0K9 344 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 ZNF281Q9Y2X9 895 aa11.29□□□□□ -0.6
USP3-213ENST00000559711 CEP250Q9BV73 2442 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 IGHV3-15A0A0B4J1V0 119 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 TRAV1-2A0A0B4J238 106 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 NPIPA2E9PIF3 369 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 NPIPA3F8WFD2 350 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 ZNF432O94892 652 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 RPP14O95059 124 aaKnown RBP11.28□□□□□ -0.6
USP3-213ENST00000559711 ZFPL1O95159 310 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 UCHL1P09936 223 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 NR2C1P13056 603 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 CD46P15529 392 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 POU3F2P20265 443 aaPredicted RBP11.28□□□□□ -0.6
USP3-213ENST00000559711 CALRP27797 417 aaKnown RBP11.28□□□□□ -0.6
USP3-213ENST00000559711 LAP3P28838 519 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 CD40LGP29965 261 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 STARP49675 285 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 ZNF133P52736 654 aaPredicted RBP11.28□□□□□ -0.6
USP3-213ENST00000559711 PPP5CP53041 499 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 ZNF45Q02386 682 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 EIF2B1Q14232 305 aaKnown RBP11.28□□□□□ -0.6
USP3-213ENST00000559711 YIF1BQ5BJH7 314 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 LRFN4Q6PJG9 635 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 LRRC69Q6ZNQ3 347 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 GALNTL5Q7Z4T8 443 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 BTLAQ7Z6A9 289 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.28□□□□□ -0.6
USP3-213ENST00000559711 CCDC190Q86UF4 302 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 TMEM251Q8N6I4 163 aa11.28□□□□□ -0.6
USP3-213ENST00000559711 ZFP62Q8NB50 900 aaPredicted RBP11.28□□□□□ -0.6
USP3-213ENST00000559711 OR2G2Q8NGZ5 317 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms