RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 ANKRD20A5PA0PJZ0 165 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 CDC14CA4D256 554 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 DCTN6O00399 190 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 PLPP3O14495 311 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 SSNA1O43805 119 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 PRKNO60260 465 aaPredicted RBP6.55□□□□□ -1.36
VPS13C-206ENST00000558338 MT-ND4P03905 459 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 CD2P06729 351 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 HEXBP07686 556 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 SULT1A3P0DMM9 295 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 SULT1A4P0DMN0 295 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 FOSL1P15407 271 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 PSMB1P20618 241 aaKnown RBP6.55□□□□□ -1.36
VPS13C-206ENST00000558338 C4BPBP20851 252 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 APOBEC1P41238 236 aaKnown RBP6.55□□□□□ -1.36
VPS13C-206ENST00000558338 SOX2P48431 317 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 PTH2RP49190 550 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 TAS2R20P59543 309 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 RNF4P78317 190 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 CFHR1Q03591 330 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 GLO1Q04760 184 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 C17orf67Q0P5P2 114 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 TOMM34Q15785 309 aaPredicted RBP6.55□□□□□ -1.36
VPS13C-206ENST00000558338 TEX30Q5JUR7 227 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 C1orf189Q5VU69 101 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 TMEM71Q6P5X7 295 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 POMZP3Q6PJE2 187 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 ESPNLQ6ZVH7 1005 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 UTS2BQ765I0 119 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 ADGRG3Q86Y34 549 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 OR52I2Q8NH67 350 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 MFSD8Q8NHS3 518 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 MCHR2Q969V1 340 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 DDIT4LQ96D03 193 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 SMOC1Q9H4F8 434 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 CCDC86Q9H6F5 360 aaKnown RBP6.55□□□□□ -1.36
VPS13C-206ENST00000558338 GPN1Q9HCN4 374 aaPredicted RBP6.55□□□□□ -1.36
VPS13C-206ENST00000558338 ANKRD10Q9NXR5 420 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 KCNG2Q9UJ96 466 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 SCP2D1Q9UJQ7 156 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 FBXL3Q9UKT7 428 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 RCE1Q9Y256 329 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 HSPB11Q9Y547 144 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 CPAMD8Q8IZJ3 1885 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 MPDZO75970 2070 aa6.55□□□□□ -1.36
VPS13C-206ENST00000558338 CDH23Q9H251 3354 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 MEIKINA0A087WXM9 373 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 SLC22A23A1A5C7 686 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 C4orf47A7E2U8 309 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 FABP7O15540 132 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF208O43345 1280 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 XRCC3O43542 346 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 SLC16A7O60669 478 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 GLSO94925 669 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-206ENST00000558338 ALX3O95076 343 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 SYPP08247 313 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 SPARCP09486 303 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 CSF1P09603 554 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 FSTP19883 344 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 CDK2P24941 298 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 MSX1P28360 303 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 CCR6P51684 374 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 GNG2P59768 71 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 ADAM8P78325 824 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 PUDPQ08623 228 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 ODF1Q14990 250 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 RAB11BQ15907 218 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 MEP1BQ16820 701 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 COL28A1Q2UY09 1125 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 WDR38Q5JTN6 314 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 COX15Q7KZN9 410 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 PRSS45Q7RTY3 260 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 IZUMO1Q8IYV9 350 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 PRSS35Q8N3Z0 413 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 C9orf62Q8N4C0 152 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 OR11H7Q8NGC8 314 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 OR5L2Q8NGL0 311 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 OR8K3Q8NH51 312 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 OR52N5Q8NH56 324 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 STT3BQ8TCJ2 826 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 ZNF431Q8TF32 576 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-206ENST00000558338 TTC9Q92623 222 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 NXPE2Q96DL1 559 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 MED30Q96HR3 178 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 RADILQ96JH8 1075 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 ELF4Q99607 663 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-206ENST00000558338 UTP23Q9BRU9 249 aaKnown RBP6.54□□□□□ -1.36
VPS13C-206ENST00000558338 RTN4RQ9BZR6 473 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 FOXQ1Q9C009 403 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 ELOVL3Q9HB03 270 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 SDHAF3Q9NRP4 125 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 SLCO1C1Q9NYB5 712 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 CTSFQ9UBX1 484 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 C19orf25Q9UFG5 118 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-206ENST00000558338 PPIEQ9UNP9 301 aaKnown RBP6.54□□□□□ -1.36
VPS13C-206ENST00000558338 DHDHQ9UQ10 334 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 REV3LO60673 3130 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 EML5Q05BV3 1969 aa6.54□□□□□ -1.36
VPS13C-206ENST00000558338 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms