RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 HS3ST3A1Q9Y663 406 aa9.89□□□□□ -0.83
USP3-206ENST00000558157 A0A1W2PPC4 97 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 A0A1W2PPE3 182 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 IDSB3KWA1 339 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 DNAJB6O75190 326 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 FARS2O95363 451 aaKnown RBP9.88□□□□□ -0.83
USP3-206ENST00000558157 CD5P06127 495 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 MRPL3P09001 348 aaKnown RBP9.88□□□□□ -0.83
USP3-206ENST00000558157 SFTA3P0C7M3 94 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 GTF2F2P13984 249 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 RAB5AP20339 215 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 CPT2P23786 658 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 TRHRP34981 398 aaPredicted RBP9.88□□□□□ -0.83
USP3-206ENST00000558157 F2RL1P55085 397 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 STXBP1P61764 594 aaKnown RBP9.88□□□□□ -0.83
USP3-206ENST00000558157 FUT5Q11128 374 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 OR52W1Q6IF63 320 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 Q6ZSR6 202 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 TMPRSS11FQ6ZWK6 438 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 SLC22A18ASQ8N1D0 253 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 GALNT16Q8N428 558 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 SCARF2Q96GP6 870 aaPredicted RBP9.88□□□□□ -0.83
USP3-206ENST00000558157 CDC6Q99741 560 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 NAA11Q9BSU3 229 aaPredicted RBP9.88□□□□□ -0.83
USP3-206ENST00000558157 DPEP2Q9H4A9 486 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 ZNF281Q9Y2X9 895 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 A0A1B0GV90 55 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 RNASEK-C17orf49H0YIS7 233 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 PLPP1O14494 284 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 PIN1P1O15428 100 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 OIP5O43482 229 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 PPP1R3DO95685 299 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 IFNA17P01571 189 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 FAM157CP0CG43 387 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 NQO2P16083 231 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 BCKDHBP21953 392 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 EDNRAP25101 427 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 CD34P28906 385 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 SLC16A1P53985 500 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 YPEL5P62699 121 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 TRA2BP62995 288 aaKnown RBP9.88□□□□□ -0.83
USP3-206ENST00000558157 TOMM20Q15388 145 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 TCEA2Q15560 299 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 STEAP1BQ6NZ63 245 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 ZNF433Q8N7K0 673 aaPredicted RBP9.88□□□□□ -0.83
USP3-206ENST00000558157 TSACCQ96A04 125 aaPredicted RBP9.88□□□□□ -0.83
USP3-206ENST00000558157 SMIM8Q96KF7 97 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 SPACA7Q96KW9 195 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 LURAP1Q96LR2 239 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 OR2M4Q96R27 311 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 MCHR1Q99705 422 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 C2orf88Q9BSF0 95 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 OR51V1Q9H2C8 321 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 IL21RQ9HBE5 538 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 SIDT1Q9NXL6 827 aaKnown RBP9.88□□□□□ -0.83
USP3-206ENST00000558157 NCDNQ9UBB6 729 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 ZNF230Q9UIE0 474 aaPredicted RBP9.88□□□□□ -0.83
USP3-206ENST00000558157 ZNF107Q9UII5 783 aaPredicted RBP9.88□□□□□ -0.83
USP3-206ENST00000558157 ADAM29Q9UKF5 820 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 PCDHGA1Q9Y5H4 931 aa9.88□□□□□ -0.83
USP3-206ENST00000558157 TRBV6-7A0A0A0MS04 114 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 C1orf105O95561 183 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 HOXB5P09067 269 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 HOXA5P20719 270 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 CFPP27918 469 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 ITPKBP27987 946 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 MAS1LP35410 378 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 BSGP35613 385 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 ADH7P40394 386 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 MAGEB1P43366 347 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 RABIFP47224 123 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 TAS2R19P59542 299 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 HGFACQ04756 655 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 TGM3Q08188 693 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 GGTLC2Q14390 218 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 MST1LQ2TV78 715 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 KHDRBS2Q5VWX1 349 aaKnown RBP9.87□□□□□ -0.83
USP3-206ENST00000558157 METRNLQ641Q3 311 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 EIF5AL1Q6IS14 154 aaKnown RBP9.87□□□□□ -0.83
USP3-206ENST00000558157 FAM180BQ6P0A1 224 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 ANKRD16Q6P6B7 361 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 LCTLQ6UWM7 567 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 RD3Q7Z3Z2 195 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 CLEC1AQ8NC01 280 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 OR56A1Q8NGH5 318 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 TMEM255BQ8WV15 326 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 OR5B2Q96R09 309 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 CHST6Q9GZX3 395 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 RHBGQ9H310 441 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 POT1Q9NUX5 634 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 CEP192Q8TEP8 1941 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 TECTAO75443 2155 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 PRR19A6NJB7 356 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 P2RX6O15547 441 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 HIST1H1BP16401 226 aaKnown RBP9.87□□□□□ -0.83
USP3-206ENST00000558157 S100A2P29034 98 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 AVPR2P30518 371 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 FXYD6P3P58550 94 aa9.87□□□□□ -0.83
USP3-206ENST00000558157 EIF5AP63241 154 aaKnown RBP9.87□□□□□ -0.83
USP3-206ENST00000558157 LTBQ06643 244 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms