RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 PSMD9O00233 223 aa15.06■□□□□ 0
LDLR-206ENST00000557958 TMCC2O75069 709 aa15.06■□□□□ 0
LDLR-206ENST00000557958 UPK3AO75631 287 aa15.06■□□□□ 0
LDLR-206ENST00000557958 NCR1O76036 304 aa15.06■□□□□ 0
LDLR-206ENST00000557958 ABHD16AO95870 558 aa15.06■□□□□ 0
LDLR-206ENST00000557958 IGHG1P01857 330 aa15.06■□□□□ 0
LDLR-206ENST00000557958 SPARCP09486 303 aa15.06■□□□□ 0
LDLR-206ENST00000557958 RAB3BP20337 219 aa15.06■□□□□ 0
LDLR-206ENST00000557958 BIDP55957 195 aa15.06■□□□□ 0
LDLR-206ENST00000557958 CSNK2A1P68400 391 aaPredicted RBP15.06■□□□□ 0
LDLR-206ENST00000557958 HSD17B12Q53GQ0 312 aa15.06■□□□□ 0
LDLR-206ENST00000557958 STEAP3Q658P3 488 aa15.06■□□□□ 0
LDLR-206ENST00000557958 XKRXQ6PP77 449 aa15.06■□□□□ 0
LDLR-206ENST00000557958 METAP1DQ6UB28 335 aaPredicted RBP15.06■□□□□ 0
LDLR-206ENST00000557958 CLEC1AQ8NC01 280 aa15.06■□□□□ 0
LDLR-206ENST00000557958 PDCD1LG2Q9BQ51 273 aa15.06■□□□□ 0
LDLR-206ENST00000557958 RNF32Q9H0A6 362 aa15.06■□□□□ 0
LDLR-206ENST00000557958 MED29Q9NX70 200 aa15.06■□□□□ 0
LDLR-206ENST00000557958 KCNG2Q9UJ96 466 aa15.06■□□□□ 0
LDLR-206ENST00000557958 RASD1Q9Y272 281 aa15.06■□□□□ 0
LDLR-206ENST00000557958 CPAMD8Q8IZJ3 1885 aa15.06■□□□□ 0
LDLR-206ENST00000557958 AQP7P3A6NL99 342 aa15.06■□□□□ 0
LDLR-206ENST00000557958 TMEM212A6NML5 194 aa15.06■□□□□ 0
LDLR-206ENST00000557958 HRGP04196 525 aa15.06■□□□□ 0
LDLR-206ENST00000557958 ZNF43P17038 809 aa15.06■□□□□ 0
LDLR-206ENST00000557958 PTBP1P26599 531 aaKnown RBP eCLIP15.06■□□□□ 0
LDLR-206ENST00000557958 SRD5A2P31213 254 aa15.06■□□□□ 0
LDLR-206ENST00000557958 EIF2B2P49770 351 aaKnown RBP15.06■□□□□ 0
LDLR-206ENST00000557958 THEM4Q5T1C6 240 aa15.06■□□□□ 0
LDLR-206ENST00000557958 IDNKQ5T6J7 187 aa15.06■□□□□ 0
LDLR-206ENST00000557958 SFXN4Q6P4A7 337 aa15.06■□□□□ 0
LDLR-206ENST00000557958 GPAT4Q86UL3 456 aa15.06■□□□□ 0
LDLR-206ENST00000557958 ZNF679Q8IYX0 411 aa15.06■□□□□ 0
LDLR-206ENST00000557958 OR8H2Q8N162 312 aa15.06■□□□□ 0
LDLR-206ENST00000557958 GDPD1Q8N9F7 314 aa15.06■□□□□ 0
LDLR-206ENST00000557958 FER1L6-AS2Q96M78 137 aa15.06■□□□□ 0
LDLR-206ENST00000557958 OR8B4Q96RC9 309 aa15.06■□□□□ 0
LDLR-206ENST00000557958 MIXL1Q9H2W2 232 aa15.06■□□□□ 0
LDLR-206ENST00000557958 STMN3Q9NZ72 180 aa15.06■□□□□ 0
LDLR-206ENST00000557958 KLHL9Q9P2J3 617 aa15.06■□□□□ 0
LDLR-206ENST00000557958 B3GAT1Q9P2W7 334 aa15.06■□□□□ 0
LDLR-206ENST00000557958 COA3Q9Y2R0 106 aaPredicted RBP15.06■□□□□ 0
LDLR-206ENST00000557958 PCSK5Q92824 1860 aa15.05■□□□□ -0
LDLR-206ENST00000557958 PRR32B1ATL7 298 aa15.05■□□□□ -0
LDLR-206ENST00000557958 G3V3Y1 287 aa15.05■□□□□ -0
LDLR-206ENST00000557958 PDCD5O14737 125 aa15.05■□□□□ -0
LDLR-206ENST00000557958 TLX3O43711 291 aaPredicted RBP15.05■□□□□ -0
LDLR-206ENST00000557958 ZFPL1O95159 310 aa15.05■□□□□ -0
LDLR-206ENST00000557958 PTTG1O95997 202 aa15.05■□□□□ -0
LDLR-206ENST00000557958 CLRN1P58418 232 aa15.05■□□□□ -0
LDLR-206ENST00000557958 OC90Q02509 493 aaPredicted RBP15.05■□□□□ -0
LDLR-206ENST00000557958 ROM1Q03395 351 aa15.05■□□□□ -0
LDLR-206ENST00000557958 FAM27D1Q5T7N8 215 aa15.05■□□□□ -0
LDLR-206ENST00000557958 ZNF468Q5VIY5 522 aaPredicted RBP15.05■□□□□ -0
LDLR-206ENST00000557958 ABHD17BQ5VST6 288 aa15.05■□□□□ -0
LDLR-206ENST00000557958 MDGA2Q7Z553 956 aa15.05■□□□□ -0
LDLR-206ENST00000557958 KRT77Q7Z794 578 aa15.05■□□□□ -0
LDLR-206ENST00000557958 BEST3Q8N1M1 668 aa15.05■□□□□ -0
LDLR-206ENST00000557958 POC5Q8NA72 575 aa15.05■□□□□ -0
LDLR-206ENST00000557958 OR13C5Q8NGS8 318 aa15.05■□□□□ -0
LDLR-206ENST00000557958 SLC25A44Q96H78 314 aaPredicted RBP15.05■□□□□ -0
LDLR-206ENST00000557958 OR14A2Q96R54 314 aa15.05■□□□□ -0
LDLR-206ENST00000557958 NAA11Q9BSU3 229 aaPredicted RBP15.05■□□□□ -0
LDLR-206ENST00000557958 MRPL22Q9NWU5 206 aaKnown RBP15.05■□□□□ -0
LDLR-206ENST00000557958 OR2M5A3KFT3 312 aa15.04■□□□□ -0
LDLR-206ENST00000557958 DVL2O14641 736 aa15.04■□□□□ -0
LDLR-206ENST00000557958 TMEM127O75204 238 aa15.04■□□□□ -0
LDLR-206ENST00000557958 AQP8O94778 261 aa15.04■□□□□ -0
LDLR-206ENST00000557958 VAMP5O95183 116 aa15.04■□□□□ -0
LDLR-206ENST00000557958 GPANK1O95872 356 aa15.04■□□□□ -0
LDLR-206ENST00000557958 APOA1P02647 267 aa15.04■□□□□ -0
LDLR-206ENST00000557958 OPN1LWP04000 364 aa15.04■□□□□ -0
LDLR-206ENST00000557958 RPS11P62280 158 aaKnown RBP eCLIP15.04■□□□□ -0
LDLR-206ENST00000557958 RAC1P63000 192 aa15.04■□□□□ -0
LDLR-206ENST00000557958 CLN3Q13286 438 aa15.04■□□□□ -0
LDLR-206ENST00000557958 EIF2B1Q14232 305 aaKnown RBP15.04■□□□□ -0
LDLR-206ENST00000557958 TOMM20Q15388 145 aa15.04■□□□□ -0
LDLR-206ENST00000557958 MEP1BQ16820 701 aa15.04■□□□□ -0
LDLR-206ENST00000557958 TEX30Q5JUR7 227 aa15.04■□□□□ -0
LDLR-206ENST00000557958 UNQ9370/PRO34162Q6UXP9 181 aa15.04■□□□□ -0
LDLR-206ENST00000557958 GLB1L2Q8IW92 636 aa15.04■□□□□ -0
LDLR-206ENST00000557958 NOXO1Q8NFA2 376 aa15.04■□□□□ -0
LDLR-206ENST00000557958 SLC26A10Q8NG04 563 aa15.04■□□□□ -0
LDLR-206ENST00000557958 OR10H5Q8NGA6 315 aa15.04■□□□□ -0
LDLR-206ENST00000557958 OR6X1Q8NH79 312 aa15.04■□□□□ -0
LDLR-206ENST00000557958 SETD6Q8TBK2 473 aa15.04■□□□□ -0
LDLR-206ENST00000557958 KCNE4Q8WWG9 221 aa15.04■□□□□ -0
LDLR-206ENST00000557958 TXNDC15Q96J42 360 aa15.04■□□□□ -0
LDLR-206ENST00000557958 SLITRK2Q9H156 845 aa15.04■□□□□ -0
LDLR-206ENST00000557958 PPIL3Q9H2H8 161 aaKnown RBP15.04■□□□□ -0
LDLR-206ENST00000557958 NOTOA8MTQ0 251 aa15.03■□□□□ -0
LDLR-206ENST00000557958 DNPH1O43598 174 aa15.03■□□□□ -0
LDLR-206ENST00000557958 ZIC3O60481 467 aa15.03■□□□□ -0
LDLR-206ENST00000557958 WT1P19544 449 aaPredicted RBP15.03■□□□□ -0
LDLR-206ENST00000557958 PTGS2P35354 604 aa15.03■□□□□ -0
LDLR-206ENST00000557958 TALDO1P37837 337 aa15.03■□□□□ -0
LDLR-206ENST00000557958 P2RY4P51582 365 aa15.03■□□□□ -0
LDLR-206ENST00000557958 RIDAP52758 137 aaKnown RBP15.03■□□□□ -0
LDLR-206ENST00000557958 NANOS3P60323 173 aaKnown RBP15.03■□□□□ -0
LDLR-206ENST00000557958 FOXK1P85037 733 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms