RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 MYCBPQ99417 103 aaPredicted RBP1.72□□□□□ -2.13
SCFD1-218ENST00000556256 P2RX4Q99571 388 aa1.72□□□□□ -2.13
SCFD1-218ENST00000556256 ATP5SQ99766 215 aa1.72□□□□□ -2.13
SCFD1-218ENST00000556256 OR51M1Q9H341 326 aa1.72□□□□□ -2.13
SCFD1-218ENST00000556256 RPP21Q9H633 154 aaKnown RBP1.72□□□□□ -2.13
SCFD1-218ENST00000556256 RPF2Q9H7B2 306 aaKnown RBP1.72□□□□□ -2.13
SCFD1-218ENST00000556256 SLC40A1Q9NP59 571 aa1.72□□□□□ -2.13
SCFD1-218ENST00000556256 ING4Q9UNL4 249 aa1.72□□□□□ -2.13
SCFD1-218ENST00000556256 PSG8Q9UQ74 426 aa1.72□□□□□ -2.13
SCFD1-218ENST00000556256 SCN2AQ99250 2005 aa1.72□□□□□ -2.13
SCFD1-218ENST00000556256 AKNAQ7Z591 1439 aa1.72□□□□□ -2.13
SCFD1-218ENST00000556256 IGHV3-66A0A0C4DH42 116 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 A0A1B0GVX0 72 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 OR2AG2A6NM03 316 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 DYNC1I1O14576 645 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 RAB29O14966 203 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 ANGPTL7O43827 346 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 CIB2O75838 187 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 RETP07949 1114 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 GNAO1P09471 354 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 PABPC4LP0CB38 370 aaKnown RBP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 ZNF823P16415 610 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 TNNI1P19237 187 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 GDI1P31150 447 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 OTX1P32242 354 aaPredicted RBP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 NAA10P41227 235 aaPredicted RBP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 TNNT2P45379 298 aaPredicted RBP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 CDH6P55285 790 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 NUTF2P61970 127 aaKnown RBP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 YWHAGP61981 247 aaKnown RBP eCLIP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 SLC25A11Q02978 314 aaKnown RBP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 SRSF5Q13243 272 aaKnown RBP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 GGTLC2Q14390 218 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 PPP1R7Q15435 360 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 CHRNA6Q15825 494 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 POU2AF1Q16633 256 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 LY6G6FQ5SQ64 297 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 ZNF691Q5VV52 312 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 LRRC66Q68CR7 880 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 SLC8B1Q6J4K2 584 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 ANKRD26P1Q6NSI1 321 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 METAP1DQ6UB28 335 aaPredicted RBP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 TEX43Q6ZNM6 134 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 Q6ZR03 302 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 ZNF493Q6ZR52 646 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 CCDC73Q6ZRK6 1079 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 EID2Q8N6I1 236 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 OR4S2Q8NH73 311 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 CXorf40AQ8TE69 158 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 STARD8Q92502 1023 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 KIFAP3Q92845 792 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 EXOSC8Q96B26 276 aaKnown RBP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 PKNOX2Q96KN3 472 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 NOX3Q9HBY0 568 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 ZNF223Q9UK11 482 aaPredicted RBP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 KIAA1257Q9ULG3 409 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 PSG11Q9UQ72 335 aa1.71□□□□□ -2.14
SCFD1-218ENST00000556256 MRPS18BQ9Y676 258 aaKnown RBP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 DHX57Q6P158 1386 aaKnown RBP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.71□□□□□ -2.14
SCFD1-218ENST00000556256 IGHV3-74A0A0B4J1X5 117 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 TRBV11-1A0A0K0K1C0 115 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 F6UB75 175 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 CDC7O00311 574 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 KMOO15229 486 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 RNF13O43567 381 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 CHST1O43916 411 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 AIREO43918 545 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 ZNF324O75467 553 aaPredicted RBP1.7□□□□□ -2.14
SCFD1-218ENST00000556256 SRP72O76094 671 aaKnown RBP1.7□□□□□ -2.14
SCFD1-218ENST00000556256 AIFM1O95831 613 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 TROVE2P10155 538 aaKnown RBP eCLIP1.7□□□□□ -2.14
SCFD1-218ENST00000556256 FOXN2P32314 431 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 UBE2AP49459 152 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 TMED10P49755 219 aaKnown RBP1.7□□□□□ -2.14
SCFD1-218ENST00000556256 MNAT1P51948 309 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 ZNF138P52744 262 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 ACTA2P62736 377 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 ACTG2P63267 376 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 ACTC1P68032 377 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 ACTA1P68133 377 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 BEX3Q00994 111 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 MXD1Q05195 221 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 CLINT1Q14677 625 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 FAM83EQ2M2I3 478 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 DEFB116Q30KQ4 102 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 PRAMEF20Q5VT98 475 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 RAET1LQ5VY80 246 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 ANKRD22Q5VYY1 191 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 OR52W1Q6IF63 320 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 FAM92BQ6ZTR7 304 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 HDDC2Q7Z4H3 204 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 KRTAP13-1Q8IUC0 172 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 LIX1Q8N485 282 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 FAM86B1Q8N7N1 296 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 NOXO1Q8NFA2 376 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 OR10J6PQ8NGY7 276 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 SLC38A4Q969I6 547 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 FAM3DQ96BQ1 224 aa1.7□□□□□ -2.14
SCFD1-218ENST00000556256 SEH1LQ96EE3 360 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms