RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 DCXRQ7Z4W1 244 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 OR51S1Q8NGJ8 323 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 TTC9Q92623 222 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 SLC39A1Q9NY26 324 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 SF3B6Q9Y3B4 125 aaKnown RBP13.48□□□□□ -0.25
CUX1-215ENST00000556210 ACOT7O00154 380 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 FOXS1O43638 330 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 RAP2BP61225 183 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 CBFBQ13951 182 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 PRTGQ2VWP7 1150 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 CLLU1Q5K131 121 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 RNLSQ5VYX0 342 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 LRRC18Q8N456 261 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 PELOQ9BRX2 385 aaKnown RBP13.48□□□□□ -0.25
CUX1-215ENST00000556210 PTDSS2Q9BVG9 487 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 ZNF701Q9NV72 531 aaPredicted RBP13.48□□□□□ -0.25
CUX1-215ENST00000556210 ACAA2P42765 397 aaKnown RBP13.48□□□□□ -0.25
CUX1-215ENST00000556210 BIDP55957 195 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 CXADRP78310 365 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 NLRC3Q7RTR2 1065 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 OR6V1Q8N148 313 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 STT3BQ8TCJ2 826 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 ZNRF4Q8WWF5 429 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 SLC46A1Q96NT5 459 aa13.48□□□□□ -0.25
CUX1-215ENST00000556210 CHMP1AQ9HD42 196 aaPredicted RBP13.48□□□□□ -0.25
CUX1-215ENST00000556210 KLK3P07288 261 aaPredicted RBP13.47□□□□□ -0.25
CUX1-215ENST00000556210 TMIGD3P0DMS9 266 aaPredicted RBP13.47□□□□□ -0.25
CUX1-215ENST00000556210 PRSS12P56730 875 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 LGALSLQ3ZCW2 172 aaPredicted RBP13.47□□□□□ -0.25
CUX1-215ENST00000556210 C14orf28Q4W4Y0 310 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 STAC2Q6ZMT1 411 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 EID2Q8N6I1 236 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 ZNF454Q8N9F8 522 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 OR11H4Q8NGC9 324 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 VSTM2LQ96N03 204 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 DLL4Q9NR61 685 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 EXOGQ9Y2C4 368 aaKnown RBP13.47□□□□□ -0.25
CUX1-215ENST00000556210 OR2AT4A6NND4 320 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 CCSO14618 274 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 PLPP2O43688 288 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 GPRIN2O60269 458 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 SCRG1O75711 98 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 HTR3BO95264 441 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 ACSM4P0C7M7 580 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 CD27P26842 260 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 SDHAP31040 664 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 DLX5P56178 289 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 UBE2NLQ5JXB2 153 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 C1orf140Q5VVS0 124 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 AWAT2Q6E213 333 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 FAM199XQ6PEV8 388 aaPredicted RBP13.47□□□□□ -0.25
CUX1-215ENST00000556210 FAM181AQ8N9Y4 354 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 FGGYQ96C11 551 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 KLHL13Q9P2N7 655 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 H0YIG0 161 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 ZNF43P17038 809 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 CCR9P51686 369 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 GK2Q14410 553 aaPredicted RBP13.47□□□□□ -0.25
CUX1-215ENST00000556210 PLA1AQ53H76 456 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 RNASE10Q5GAN6 216 aaKnown RBP13.47□□□□□ -0.25
CUX1-215ENST00000556210 PRSS42Q7Z5A4 293 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 GLB1L2Q8IW92 636 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 PCDHB16Q9NRJ7 776 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 ELF5Q9UKW6 265 aaPredicted RBP13.47□□□□□ -0.25
CUX1-215ENST00000556210 RNF215Q9Y6U7 377 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 ICE1Q9Y2F5 2266 aa13.47□□□□□ -0.25
CUX1-215ENST00000556210 ROS1P08922 2347 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 ALOX12BO75342 701 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 ITGA3P26006 1051 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 MAP2K6P52564 334 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 ZNF117Q03924 483 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 NR2C2APQ86WQ0 139 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 ZNF687Q8N1G0 1237 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 BCL2L14Q9BZR8 327 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 SLC6A15Q9H2J7 730 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 TMEM184BQ9Y519 407 aaPredicted RBP13.46□□□□□ -0.25
CUX1-215ENST00000556210 NAP1L6A6NFF2 107 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 DISC1C4P0D8 188 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 F5H5P2 479 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 HPXP02790 462 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 SORDQ00796 357 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 PUDPQ08623 228 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 SGCBQ16585 318 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 ZNF74Q16587 644 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 C9orf135Q5VTT2 229 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 C17orf107Q6ZR85 190 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 BEST3Q8N1M1 668 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 OR2G2Q8NGZ5 317 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 ZNF578Q96N58 590 aaPredicted RBP13.46□□□□□ -0.25
CUX1-215ENST00000556210 TSNAXQ99598 290 aaKnown RBP13.46□□□□□ -0.25
CUX1-215ENST00000556210 METTL8Q9H825 291 aaKnown RBP13.46□□□□□ -0.25
CUX1-215ENST00000556210 MMP25Q9NPA2 562 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 TAS2R4Q9NYW5 299 aa13.46□□□□□ -0.25
CUX1-215ENST00000556210 DNAH14Q0VDD8 3507 aa13.46□□□□□ -0.26
CUX1-215ENST00000556210 TMEM235A6NFC5 223 aa13.46□□□□□ -0.26
CUX1-215ENST00000556210 IGHA1P01876 353 aa13.46□□□□□ -0.26
CUX1-215ENST00000556210 NANOS3P60323 173 aaKnown RBP13.46□□□□□ -0.26
CUX1-215ENST00000556210 S100A10P60903 97 aa13.46□□□□□ -0.26
CUX1-215ENST00000556210 GSG1Q2KHT4 349 aa13.46□□□□□ -0.26
CUX1-215ENST00000556210 B3GNTL1Q67FW5 361 aaPredicted RBP13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms