RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 C14orf119Q9NWQ9 140 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 FUOMA2VDF0 154 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 TMEM212A6NML5 194 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 TMCC2O75069 709 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 HRGP04196 525 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 ZNF823P16415 610 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 BCAP31P51572 246 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 MEP1BQ16820 701 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 PCK2Q16822 640 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 LRRC69Q6ZNQ3 347 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 PSMF1Q92530 271 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 DCBLD2Q96PD2 775 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 NOX4Q9NPH5 578 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 ING1Q9UK53 422 aaPredicted RBP23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 RASD1Q9Y272 281 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 PCSK5Q92824 1860 aa23.54■■□□□ 1.36
CCDC88C-205ENST00000553403 EML6Q6ZMW3 1958 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 ARPC4-TTLL3A0A0A6YYG9 625 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 TRBV5-5A0A0J9YX44 114 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 OR4C45A6NMZ5 311 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 G3V3Y1 287 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 TRAF3IP2O43734 574 aaPredicted RBP23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 TNFSF15O95150 251 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 MAPK3P27361 379 aaPredicted RBP23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 FMODQ06828 376 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 RIN1Q13671 783 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 EIF2B1Q14232 305 aaKnown RBP23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 CEP78Q5JTW2 689 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 THEM4Q5T1C6 240 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 RAET1LQ5VY80 246 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 TMEM225Q6GV28 225 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 RNF128Q8TEB7 428 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 DERL3Q96Q80 235 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 PIGQQ9BRB3 760 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 COMMD4Q9H0A8 199 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 PPP1R3EQ9H7J1 279 aa23.53■■□□□ 1.36
CCDC88C-205ENST00000553403 CEP250Q9BV73 2442 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 A0A1W2PPK0 400 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 OR2M5A3KFT3 312 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 PDCD5O14737 125 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 PIN1P1O15428 100 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 IL7P13232 177 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 APEX1P27695 318 aaKnown RBP23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 SRD5A2P31213 254 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 CCR9P51686 369 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 BAK1Q16611 211 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 Q499Y3 187 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 OR6X1Q8NH79 312 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 C4orf45Q96LM5 186 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 ABHD6Q9BV23 337 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 TIGARQ9NQ88 270 aa23.52■■□□□ 1.36
CCDC88C-205ENST00000553403 AQP8O94778 261 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 IGHG1P01857 330 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 SRMP19623 302 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 AZGP1P25311 298 aaKnown RBP23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 PYDC2Q56P42 97 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 ZSCAN2Q7Z7L9 614 aaPredicted RBP23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 LRRC28Q86X40 367 aaPredicted RBP23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 NOXO1Q8NFA2 376 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 OR52N5Q8NH56 324 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 SLC25A44Q96H78 314 aaPredicted RBP23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 THOC3Q96J01 351 aaKnown RBP23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 EMC6Q9BV81 110 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 ABRACLQ9P1F3 81 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 LOC101059948A0A1B0GTJ6 334 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 DCDC2BA2VCK2 349 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 EIF1BO60739 113 aaKnown RBP23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 TMEM127O75204 238 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 APOA1P02647 267 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 DNASE1L1P49184 302 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 CYB561P49447 251 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 RAC1P63000 192 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 SLC25A35Q3KQZ1 300 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 ZNF544Q6NX49 715 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 LRRN1Q6UXK5 716 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 KRT77Q7Z794 578 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 GLB1L2Q8IW92 636 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 BEST3Q8N1M1 668 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 ADAMTS17Q8TE56 1095 aa23.51■■□□□ 1.35
CCDC88C-205ENST00000553403 SPEGQ15772 3267 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 IGKV1D-43A0A0B4J1Z2 117 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 FAM25AB3EWG3 89 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 FAM25CB3EWG5 89 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 FAM25GB3EWG6 89 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 ZNF814B7Z6K7 855 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 STMND1H3BQB6 276 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 MPZL1O95297 269 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 PGA4P0DJD7 388 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 PGA3P0DJD8 388 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 EPXP11678 715 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 ZNF43P17038 809 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 RIDAP52758 137 aaKnown RBP23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 CLRN1P58418 232 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 H3F3AP84243 136 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 AGAP7PQ5VUJ5 663 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 PRSS35Q8N3Z0 413 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 THRSPQ92748 146 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 IP6K3Q96PC2 410 aa23.5■■□□□ 1.35
CCDC88C-205ENST00000553403 CYSLTR2Q9NS75 346 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms