RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 CCL8P80075 99 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 MRPS11P82912 194 aaKnown RBP5.47□□□□□ -1.53
LIMA1-204ENST00000549064 SKP2Q13309 424 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 LASP1Q14847 261 aaKnown RBP5.47□□□□□ -1.53
LIMA1-204ENST00000549064 SLC17A1Q14916 467 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 DCST2Q5T1A1 773 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 PDZK1Q5T2W1 519 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 KLC3Q6P597 504 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 FIP1L1Q6UN15 594 aaKnown RBP5.47□□□□□ -1.53
LIMA1-204ENST00000549064 SYT10Q6XYQ8 523 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 MDP1Q86V88 176 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 SCAIQ8N9R8 606 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 POMGNT2Q8NAT1 580 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 ST8SIA1Q92185 356 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 TMEM45BQ96B21 275 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 EGLN2Q96KS0 407 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 KCNA7Q96RP8 456 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 CCDC106Q9BWC9 280 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 CADM1Q9BY67 442 aaKnown RBP5.47□□□□□ -1.53
LIMA1-204ENST00000549064 ACER3Q9NUN7 267 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 AURKAIP1Q9NWT8 199 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-204ENST00000549064 UBAP1Q9NZ09 502 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 CHRNA9Q9UGM1 479 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 LEF1Q9UJU2 399 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-204ENST00000549064 TIMM22Q9Y584 194 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 TANC2Q9HCD6 1990 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 DNAH9Q9NYC9 4486 aa5.47□□□□□ -1.53
LIMA1-204ENST00000549064 TENM3Q9P273 2699 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 A0A1W2PPW3 197 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 LINC00473A8K010 186 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 TRAPPC2LH3BP13 241 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 UBE2CO00762 179 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 SMIM24O75264 130 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 RSL1D1O76021 490 aaKnown RBP5.46□□□□□ -1.54
LIMA1-204ENST00000549064 OR2C1O95371 312 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 HSPA4LO95757 839 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 HMGN2P05204 90 aaKnown RBP5.46□□□□□ -1.54
LIMA1-204ENST00000549064 CRYBA1P05813 215 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 IFI6P09912 130 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 EDN2P20800 178 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 HMOX2P30519 316 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 RYKP34925 604 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 HSD17B3P37058 310 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 EVX1P49640 407 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF84P51523 738 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF154Q13106 437 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 GLIPR1L2Q4G1C9 344 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 SPDYAQ5MJ70 313 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF362Q5T0B9 420 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-204ENST00000549064 GKAP1Q5VSY0 366 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-204ENST00000549064 REP15Q6BDI9 236 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 TMEM154Q6P9G4 183 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 C3orf62Q6ZUJ4 267 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 ABHD12BQ7Z5M8 362 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-204ENST00000549064 GPAT4Q86UL3 456 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 ADGRG3Q86Y34 549 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 LINC00346Q8IVM7 164 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 KLHL7Q8IXQ5 586 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 TMEM99Q8N816 258 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 SPC24Q8NBT2 197 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 OR9K2Q8NGE7 335 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 KIF18AQ8NI77 898 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 MAGEE2Q8TD90 523 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-204ENST00000549064 ACTRT1Q8TDG2 376 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 TMEM234Q8WY98 164 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 GTF3AQ92664 365 aaKnown RBP5.46□□□□□ -1.54
LIMA1-204ENST00000549064 TSPAN32Q96QS1 320 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 GAL3ST1Q99999 423 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 LAT2Q9GZY6 243 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 HOXD1Q9GZZ0 328 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 PIGUQ9H490 435 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 ZCCHC4Q9H5U6 513 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 MARCH7Q9H992 704 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 KIAA1456Q9P272 454 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 TMEM181Q9P2C4 612 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 NLKQ9UBE8 527 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 KLHL21Q9UJP4 597 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 PURGQ9UJV8 347 aaKnown RBP5.46□□□□□ -1.54
LIMA1-204ENST00000549064 SNX24Q9Y343 169 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 HDGFL3Q9Y3E1 203 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 AUP1Q9Y679 476 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 NOTCH3Q9UM47 2321 aa5.46□□□□□ -1.54
LIMA1-204ENST00000549064 DOCK11Q5JSL3 2073 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 IGHV1-69-2A0A0G2JMI3 117 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 TMEM72A0PK05 275 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 ISPDA4D126 451 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 OR6C68A6NDL8 312 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 A8MT66 165 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 CLDN25C9JDP6 229 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 H0YL77 283 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 TRAF3IP2O43734 574 aaPredicted RBP5.45□□□□□ -1.54
LIMA1-204ENST00000549064 PAGE4O60829 102 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 AKR7A3O95154 331 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 NDUFA7O95182 113 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 CLPTM1O96005 669 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 CSTAP01040 98 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 PAX7P23759 505 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 POU1F1P28069 291 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 GLRXP35754 106 aa5.45□□□□□ -1.54
LIMA1-204ENST00000549064 ARR3P36575 388 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms