RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 LIPEQ05469 1076 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 TWF1Q12792 350 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 TTLL9Q3SXZ7 439 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 PIGGQ5H8A4 983 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 ANXA8L1Q5VT79 327 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 SPECC1LQ69YQ0 1117 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 C22orf42Q6IC83 251 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 IGFL2Q6UWQ7 119 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 TMEM179Q6ZVK1 233 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 NCCRP1Q6ZVX7 275 aaPredicted RBP2.71□□□□□ -1.98
VPS29-205ENST00000548539 BZW1Q7L1Q6 419 aaKnown RBP2.71□□□□□ -1.98
VPS29-205ENST00000548539 C6orf120Q7Z4R8 191 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 TMEM135Q86UB9 458 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 OAFQ86UD1 273 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 MMAAQ8IVH4 418 aaKnown RBP2.71□□□□□ -1.98
VPS29-205ENST00000548539 CMTM1Q8IZ96 169 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 ZFP41Q8N8Y5 198 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 STARD8Q92502 1023 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 NRGNQ92686 78 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 FAM3DQ96BQ1 224 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 ASB9Q96DX5 294 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 DUS3LQ96G46 650 aaKnown RBP2.71□□□□□ -1.98
VPS29-205ENST00000548539 PRRC1Q96M27 445 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 DMAP1Q9NPF5 467 aaPredicted RBP2.71□□□□□ -1.98
VPS29-205ENST00000548539 UXTQ9UBK9 157 aaPredicted RBP2.71□□□□□ -1.98
VPS29-205ENST00000548539 SHPKQ9UHJ6 478 aa2.71□□□□□ -1.98
VPS29-205ENST00000548539 ZNF223Q9UK11 482 aaPredicted RBP2.71□□□□□ -1.98
VPS29-205ENST00000548539 TMX2-CTNND1H3BSU7 103 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 SIRPB1O00241 398 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 PES1O00541 588 aaKnown RBP2.7□□□□□ -1.98
VPS29-205ENST00000548539 MRPS12O15235 138 aaKnown RBP2.7□□□□□ -1.98
VPS29-205ENST00000548539 SS18L1O75177 396 aaPredicted RBP2.7□□□□□ -1.98
VPS29-205ENST00000548539 C6orf47O95873 294 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 BGLAPP02818 100 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 OR8G3PP0DMU2 310 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 MDKP21741 143 aaPredicted RBP2.7□□□□□ -1.98
VPS29-205ENST00000548539 MAS1LP35410 378 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 SLC1A1P43005 524 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 UQCRFS1P47985 274 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 CRISP1P54107 249 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 SLC7A9P82251 487 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 PAX5Q02548 391 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 ILKQ13418 452 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 CLINT1Q14677 625 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 PON3Q15166 354 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 TMEM220Q6QAJ8 160 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 ZNF493Q6ZR52 646 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 STRADAQ7RTN6 431 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 PRELID2Q8N945 189 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 BBOF1Q8ND07 529 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 MDS2Q8NDY4 140 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 OR4C5Q8NGB2 326 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 AGR3Q8TD06 166 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 ECHDC3Q96DC8 303 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 SERPINB12Q96P63 405 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 TSSK3Q96PN8 268 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 TAAR1Q96RJ0 339 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 TGS1Q96RS0 853 aaKnown RBP2.7□□□□□ -1.98
VPS29-205ENST00000548539 SH3GL3Q99963 347 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 EXO5Q9H790 373 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 BEX1Q9HBH7 125 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 RETNQ9HD89 108 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 HRASLS2Q9NWW9 162 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 STOX2Q9P2F5 926 aaPredicted RBP2.7□□□□□ -1.98
VPS29-205ENST00000548539 ST3GAL6Q9Y274 331 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 LTBP1Q14766 1721 aa2.7□□□□□ -1.98
VPS29-205ENST00000548539 IGHV3-64DA0A0J9YX35 117 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 PLAC8L1A1L4L8 177 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 NKX2-6A6NCS4 301 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 OR2F2O95006 317 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 FABP3P05413 133 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 PLEKP08567 350 aaPredicted RBP2.69□□□□□ -1.98
VPS29-205ENST00000548539 GNAO1P09471 354 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 MYL2P10916 166 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 MGMTP16455 207 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 BCKDHBP21953 392 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 HOXA9P31269 272 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 OTX1P32242 354 aaPredicted RBP2.69□□□□□ -1.98
VPS29-205ENST00000548539 FOXN2P32314 431 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 ZNF136P52737 540 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 EIF3EP60228 445 aaKnown RBP2.69□□□□□ -1.98
VPS29-205ENST00000548539 ADARB1P78563 741 aaKnown RBP2.69□□□□□ -1.98
VPS29-205ENST00000548539 HMGCS1Q01581 520 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 PRPSAP1Q14558 356 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 PTPN20Q4JDL3 420 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 CCNJQ5T5M9 372 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 CLEC2AQ6UVW9 174 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 PEX26Q7Z412 305 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 IQCKQ8N0W5 287 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 STPG2Q8N412 459 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 ZNF799Q96GE5 643 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 MRPL37Q9BZE1 423 aaKnown RBP2.69□□□□□ -1.98
VPS29-205ENST00000548539 PLA2G2FQ9BZM2 168 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 CCNB1IP1Q9NPC3 277 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 GPATCH2LQ9NWQ4 482 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 ZNF629Q9UEG4 869 aaPredicted RBP2.69□□□□□ -1.98
VPS29-205ENST00000548539 WSB1Q9Y6I7 421 aa2.69□□□□□ -1.98
VPS29-205ENST00000548539 TDRD6O60522 2096 aaKnown RBP2.69□□□□□ -1.98
VPS29-205ENST00000548539 PRRC2AP48634 2157 aaKnown RBP2.68□□□□□ -1.98
VPS29-205ENST00000548539 CENPJQ9HC77 1338 aaPredicted RBP2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms