RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 A0A1W2PR48 441 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 JMJD7P0C870 316 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 PSMB6P28072 239 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 RFC3P40938 356 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 PTGFRP43088 359 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 UBE2KP61086 200 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 KLF9Q13886 244 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-215ENST00000544547 DUSP5Q16690 384 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 ZNF770Q6IQ21 691 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-215ENST00000544547 C11orf87Q6NUJ2 197 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 FAM181AQ8N9Y4 354 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 SFXN5Q8TD22 340 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 MR1Q95460 341 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 SHARPINQ9H0F6 387 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 SF3B6Q9Y3B4 125 aaKnown RBP13.03□□□□□ -0.32
LIMS1-215ENST00000544547 PCNTO95613 3336 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 HMSDA8MTL9 139 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 IMPA2O14732 288 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 KCNAB3O43448 404 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 OR2T1O43869 369 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 ABLIM3O94929 683 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 PXNP49023 591 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-215ENST00000544547 PRDX1Q06830 199 aaKnown RBP13.03□□□□□ -0.32
LIMS1-215ENST00000544547 DCAF12L2Q5VW00 463 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 SLC18B1Q6NT16 456 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 FAM24BQ8N5W8 94 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 OR4S1Q8NGB4 309 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 OR11G2Q8NGC1 345 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 DAZLQ92904 295 aaKnown RBP13.03□□□□□ -0.32
LIMS1-215ENST00000544547 G6PC3Q9BUM1 346 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 PRO1933Q9H354 126 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 TAF9BQ9HBM6 251 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 PCDHGA5Q9Y5G8 931 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 ETV7Q9Y603 341 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 KCNMB2Q9Y691 235 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 A0A087WZY1 265 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 HMGB3O15347 200 aaKnown RBP13.03□□□□□ -0.32
LIMS1-215ENST00000544547 TBXA2RP21731 343 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 GPR18Q14330 331 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 RSU1Q15404 277 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 SLC36A2Q495M3 483 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 B3GNTL1Q67FW5 361 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-215ENST00000544547 OR52W1Q6IF63 320 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 FAM213BQ8TBF2 198 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 MIB2Q96AX9 1013 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 DTD2Q96FN9 168 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 BRWD3Q6RI45 1802 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 TRAV1-2A0A0B4J238 106 aa13.02□□□□□ -0.32
LIMS1-215ENST00000544547 SMAD2Q15796 467 aaKnown RBP13.02□□□□□ -0.32
LIMS1-215ENST00000544547 C4orf17Q53FE4 359 aa13.02□□□□□ -0.32
LIMS1-215ENST00000544547 ZNF660Q6AZW8 331 aaPredicted RBP13.02□□□□□ -0.32
LIMS1-215ENST00000544547 Q6ZRG5 221 aa13.02□□□□□ -0.32
LIMS1-215ENST00000544547 ZNF283Q8N7M2 679 aa13.02□□□□□ -0.32
LIMS1-215ENST00000544547 AKR7LQ8NHP1 331 aa13.02□□□□□ -0.32
LIMS1-215ENST00000544547 RXFP4Q8TDU9 374 aa13.02□□□□□ -0.32
LIMS1-215ENST00000544547 CA5BP1Q8WTZ4 195 aa13.02□□□□□ -0.32
LIMS1-215ENST00000544547 NRTNQ99748 197 aa13.02□□□□□ -0.32
LIMS1-215ENST00000544547 MCOLN1Q9GZU1 580 aa13.02□□□□□ -0.32
LIMS1-215ENST00000544547 TOLLIPQ9H0E2 274 aa13.02□□□□□ -0.32
LIMS1-215ENST00000544547 WIF1Q9Y5W5 379 aa13.02□□□□□ -0.32
LIMS1-215ENST00000544547 HOXC8P31273 242 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 BSGP35613 385 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 FXYD4P59646 89 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 GNMTQ14749 295 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 C19orf48Q6RUI8 117 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 RNF165Q6ZSG1 346 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 MRPS24Q96EL2 167 aaKnown RBP13.02□□□□□ -0.33
LIMS1-215ENST00000544547 SUCNR1Q9BXA5 334 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 ANKRD19PQ9H560 264 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 FAM86C1Q9NVL1 165 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 OR5V1Q9UGF6 321 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 ZNF230Q9UIE0 474 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-215ENST00000544547 SMCO3A2RU48 225 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 CYTIPO60759 359 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 HLA-DQB1P01920 261 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 CD63P08962 238 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 SFTA3P0C7M3 94 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 C5AR1P21730 350 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 PLCXD2Q0VAA5 305 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 THSD4Q6ZMP0 1018 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 FNDC9Q8TBE3 224 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 TPSD1Q9BZJ3 242 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 CCDC86Q9H6F5 360 aaKnown RBP13.02□□□□□ -0.33
LIMS1-215ENST00000544547 PPP4R1LQ9P1A2 415 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 PIAS3Q9Y6X2 628 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 A0A1B0GTH9 108 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 LINC00587B1AMM8 73 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 ZNF354AO60765 605 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-215ENST00000544547 GLI4P10075 376 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 CALCBP10092 127 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 CST5P28325 142 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-215ENST00000544547 PRPS1P60891 318 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 SLC7A9P82251 487 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 TRMT12Q53H54 448 aaKnown RBP13.02□□□□□ -0.33
LIMS1-215ENST00000544547 FIGLAQ6QHK4 219 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 OR4K15Q8NH41 348 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 PEX11GQ96HA9 241 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 CHST6Q9GZX3 395 aa13.02□□□□□ -0.33
LIMS1-215ENST00000544547 MEGF11A6BM72 1044 aa13.01□□□□□ -0.33
LIMS1-215ENST00000544547 SLC16A7O60669 478 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms