RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 INTS14Q96SY0 518 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 NPY6RQ99463 290 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 CACNG4Q9UBN1 327 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 DKKL1Q9UK85 242 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 GPR34Q9UPC5 381 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 TRBC2A0A5B9 178 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 MASP2O00187 686 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 ZNF264O43296 627 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 LDB2O43679 373 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 GCGP01275 180 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 IGHA1P01876 353 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 CXCL10P02778 98 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 IFNW1P05000 195 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 GALTP07902 379 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 ELFN1P0C7U0 828 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 ITPKBP27987 946 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 COX20Q5RI15 118 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 FBXO42Q6P3S6 717 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 ZNF705AQ6ZN79 300 aaPredicted RBP8.61□□□□□ -1.03
CLIP1-214ENST00000540539 NKAPQ8N5F7 415 aaKnown RBP8.61□□□□□ -1.03
CLIP1-214ENST00000540539 NFKBIDQ8NI38 313 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 ZNF775Q96BV0 537 aaPredicted RBP8.61□□□□□ -1.03
CLIP1-214ENST00000540539 SNX22Q96L94 193 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 ACTRT3Q9BYD9 372 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 NUDT4Q9NZJ9 180 aa8.61□□□□□ -1.03
CLIP1-214ENST00000540539 LOC105371242A0A075B767 164 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 C1orf226A1L170 272 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 C22orf46C9J442 243 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 M0QZ24 198 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 GMFGO60234 142 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 SCGNO76038 276 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 AQP2P41181 271 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 TNFSF10P50591 281 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 RAB7AP51149 207 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 YBEYP58557 167 aaPredicted RBP8.6□□□□□ -1.03
CLIP1-214ENST00000540539 CDK5Q00535 292 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 ELOBQ15370 118 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 BATFQ16520 125 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 C1orf194Q5T5A4 169 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 RTN4RL1Q86UN2 441 aaPredicted RBP8.6□□□□□ -1.03
CLIP1-214ENST00000540539 SIDT2Q8NBJ9 832 aaKnown RBP8.6□□□□□ -1.03
CLIP1-214ENST00000540539 OR13D1Q8NGV5 346 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 SMPDL3BQ92485 455 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 NME7Q9Y5B8 376 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 TTC3P53804 2025 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 ZNF727A8MUV8 499 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 UPK3BL1B0FP48 263 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 UPK3BL2E5RIL1 263 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 FAAHO00519 579 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 RPP14O95059 124 aaKnown RBP8.6□□□□□ -1.03
CLIP1-214ENST00000540539 ERVFRD-1P60508 538 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 REEP5Q00765 189 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 BDH1Q02338 343 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 SCARB2Q14108 478 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 TCTN1Q2MV58 587 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 TANGO2Q6ICL3 276 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 NUFIP2Q7Z417 695 aaKnown RBP8.6□□□□□ -1.03
CLIP1-214ENST00000540539 OR4K17Q8NGC6 315 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 ABHD4Q8TB40 342 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 CD300LFQ8TDQ1 290 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 THRSPQ92748 146 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 CDS1Q92903 461 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 DERL3Q96Q80 235 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 GPR87Q9BY21 358 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 TPSD1Q9BZJ3 242 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 PLA2G12AQ9BZM1 189 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 OR2J1Q9GZK6 312 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 PCBD2Q9H0N5 130 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 C1orf198Q9H425 327 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 EXO5Q9H790 373 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 METTL8Q9H825 291 aaKnown RBP8.6□□□□□ -1.03
CLIP1-214ENST00000540539 SERGEFQ9UGK8 458 aa8.6□□□□□ -1.03
CLIP1-214ENST00000540539 TGIF2-C20orf24A0A0A6YYL0 155 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 A0A1W2PPK0 400 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 MEIS3P2A8K0S8 358 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 ZNF208O43345 1280 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 LRP3O75074 770 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 AHSA1O95433 338 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 TK1P04183 234 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 CTXN2P0C2S0 81 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 PNLIPP16233 465 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 CHRNB4P30926 498 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 GDF5P43026 501 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 CAPZBP47756 277 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 C4orf17Q53FE4 359 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 TMED4Q7Z7H5 227 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 TMEM183AQ8IXX5 376 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 MFSD9Q8NBP5 474 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 OR4K5Q8NGD3 323 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 OR13C4Q8NGS5 318 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 OR13C5Q8NGS8 318 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 VWCEQ96DN2 955 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 KLHL5Q96PQ7 755 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 CXCL16Q9H2A7 254 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 POFUT1Q9H488 388 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 KLK14Q9P0G3 267 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 LRFN1Q9P244 771 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 ZNF282Q9UDV7 671 aaPredicted RBP8.59□□□□□ -1.03
CLIP1-214ENST00000540539 PITPNC1Q9UKF7 332 aa8.59□□□□□ -1.03
CLIP1-214ENST00000540539 AMDHD2Q9Y303 409 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms