RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 DHRS9Q9BPW9 319 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 KCNS3Q9BQ31 491 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 REEP1Q9H902 201 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 NOX3Q9HBY0 568 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 GRHPRQ9UBQ7 328 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 UGT2A1Q9Y4X1 527 aa13.08□□□□□ -0.32
CPSF1-208ENST00000532560 PLCE1Q9P212 2302 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 IGKV1D-43A0A0B4J1Z2 117 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 E7EQL1 145 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 XKRYO14609 159 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 CRYAAP02489 173 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 SOD3P08294 240 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 CELA3BP08861 270 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 APEHP13798 732 aaKnown RBP13.07□□□□□ -0.32
CPSF1-208ENST00000532560 PAX1P15863 534 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 MRPS34P82930 218 aaKnown RBP13.07□□□□□ -0.32
CPSF1-208ENST00000532560 NPRL3Q12980 569 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 TSPAN31Q12999 210 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 KRR1Q13601 381 aaKnown RBP13.07□□□□□ -0.32
CPSF1-208ENST00000532560 ZNF544Q6NX49 715 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 DPY19L2P2Q6ZN68 376 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 ZNF620Q6ZNG0 422 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 ADCK1Q86TW2 530 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 MYPOPQ86VE0 399 aaPredicted RBP13.07□□□□□ -0.32
CPSF1-208ENST00000532560 SPATA24Q86W54 205 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 SKA3Q8IX90 412 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 GNPDA2Q8TDQ7 276 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 Q96M85 177 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 ZNF75AQ96N20 296 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 RBP7Q96R05 134 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 CHID1Q9BWS9 393 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 GRIP2Q9C0E4 1043 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 OR52D1Q9H346 318 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 SEC61A2Q9H9S3 476 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 C8orf4Q9NR00 106 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 VNN3Q9NY84 501 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 FBXL3Q9UKT7 428 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 MOKQ9UQ07 419 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 LAMP3Q9UQV4 416 aa13.07□□□□□ -0.32
CPSF1-208ENST00000532560 SAMHD1Q9Y3Z3 626 aaKnown RBP13.07□□□□□ -0.32
CPSF1-208ENST00000532560 TEX13CA0A0J9YWL9 993 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 TCRBV3S1A0A5B6 114 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 PRSS37A4D1T9 235 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 OVOL3O00110 214 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 CCNB2O95067 398 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 RAB36O95755 333 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 TXNDC12O95881 172 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 ZNF14P17017 642 aaPredicted RBP13.06□□□□□ -0.32
CPSF1-208ENST00000532560 NPR2P20594 1047 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 PEX2P28328 305 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 SLC6A6P31641 620 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 GIPRP48546 466 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 RPS6KA3P51812 740 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 RFX4Q33E94 735 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 ZNF770Q6IQ21 691 aaPredicted RBP13.06□□□□□ -0.32
CPSF1-208ENST00000532560 FOXL2NBQ6ZUU3 175 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 CLDN22Q8N7P3 220 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 IL17RDQ8NFM7 739 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 OR9Q2Q8NGE9 314 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 NSMAFQ92636 917 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 NABP1Q96AH0 204 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 TRAF4Q9BUZ4 470 aaPredicted RBP13.06□□□□□ -0.32
CPSF1-208ENST00000532560 GSX2Q9BZM3 304 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 ZNF701Q9NV72 531 aaPredicted RBP13.06□□□□□ -0.32
CPSF1-208ENST00000532560 IL20RAQ9UHF4 553 aa13.06□□□□□ -0.32
CPSF1-208ENST00000532560 HEATR1Q9H583 2144 aaKnown RBP13.06□□□□□ -0.32
CPSF1-208ENST00000532560 IGHV2OR16-5A0A0B4J2B6 119 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 SLC22A23A1A5C7 686 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 H7C1C5 153 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 ARHGEF9O43307 516 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 CST1P01037 141 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 CALCRP30988 508 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 TTKP33981 857 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 LCN6P62502 163 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 RAB1AP62820 205 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 PIGFQ07326 219 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 MICAQ29983 383 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 SLC36A2Q495M3 483 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 AGAP6Q5VW22 663 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 RPL13AP3Q6NVV1 102 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 NUP37Q8NFH4 326 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 OR4F15Q8NGB8 312 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 HTRA1Q92743 480 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 RASD2Q96D21 266 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 SH3GL3Q99963 347 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 SIAEQ9HAT2 523 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 VSX1Q9NZR4 365 aaPredicted RBP13.05□□□□□ -0.32
CPSF1-208ENST00000532560 IER3IP1Q9Y5U9 82 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 ATP23Q9Y6H3 246 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 CDH10Q9Y6N8 788 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 U3KQV3 271 aa13.05□□□□□ -0.32
CPSF1-208ENST00000532560 ARRDC5A6NEK1 342 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 IMPA2O14732 288 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 ARPC3O15145 178 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 PPP1R3DO95685 299 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 CD8AP01732 235 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 CDAP32320 146 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 PTH2RP49190 550 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 CHN2P52757 468 aa13.04□□□□□ -0.32
CPSF1-208ENST00000532560 PPP1R8Q12972 351 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms