RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 MRASO14807 208 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 TRMUO75648 421 aaKnown RBP12.61□□□□□ -0.39
VPS28-215ENST00000531924 NPPAP01160 153 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 THRBP10828 461 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 ANPEPP15144 967 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 ZNF250P15622 560 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 GCH1P30793 250 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 OR1E2P47887 323 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 GZMMP51124 257 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 TOP3AQ13472 1001 aaPredicted RBP12.61□□□□□ -0.39
VPS28-215ENST00000531924 PIN1Q13526 163 aaPredicted RBP12.61□□□□□ -0.39
VPS28-215ENST00000531924 HIST3H3Q16695 136 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 LRRC23Q53EV4 343 aaPredicted RBP12.61□□□□□ -0.39
VPS28-215ENST00000531924 PABPC1L2AQ5JQF8 200 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 FAHD2BQ6P2I3 314 aaPredicted RBP12.61□□□□□ -0.39
VPS28-215ENST00000531924 NKAIN4Q8IVV8 208 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 TEX29Q8N6K0 151 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 OR1J1Q8NGS3 322 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 FAHD2AQ96GK7 314 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 LRRC37BQ96QE4 947 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 RBP7Q96R05 134 aa12.61□□□□□ -0.39
VPS28-215ENST00000531924 MRPL13Q9BYD1 178 aaKnown RBP12.61□□□□□ -0.39
VPS28-215ENST00000531924 PLSCR5A0PG75 271 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 NCR1O76036 304 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 SLC2A10O95528 541 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 IGF2P01344 180 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 GAAP10253 952 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 ITGA2P17301 1181 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 STOMP27105 288 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 CDAP32320 146 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 GDI2P50395 445 aaKnown RBP12.6□□□□□ -0.39
VPS28-215ENST00000531924 ARFIP2P53365 341 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 CRYBA2P53672 197 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 ERVS71-1P61550 626 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 MRPS34P82930 218 aaKnown RBP12.6□□□□□ -0.39
VPS28-215ENST00000531924 MVKQ03426 396 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 GLO1Q04760 184 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 LAPTM4AQ15012 233 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 TSTQ16762 297 aaKnown RBP12.6□□□□□ -0.39
VPS28-215ENST00000531924 CYBRD1Q53TN4 286 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 ALG10Q5BKT4 473 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 COQ5Q5HYK3 327 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 C10orf128Q5T292 105 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 CALHM3Q86XJ0 350 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 ALDH16A1Q8IZ83 802 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 MOSPD2Q8NHP6 518 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 C10orf82Q8WW14 230 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 LZICQ8WZA0 190 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 TIMD4Q96H15 378 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 TSPAN32Q96QS1 320 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 SMURF2Q9HAU4 748 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 C20orf141Q9NUB4 165 aa12.6□□□□□ -0.39
VPS28-215ENST00000531924 IGLV3-9A0A075B6K5 115 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 TRAV20A0A0B4J274 112 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 IGHV1-69-2A0A0G2JMI3 117 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 LOC100653049A0A140TA62 436 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 C5orf49A4QMS7 147 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 HTR3EA5X5Y0 456 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 FAM157AC9JC47 383 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 CLDN25C9JDP6 229 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 KRT34O76011 436 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 ZNF81P51508 661 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 ST3GAL3Q11203 375 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 SF3A3Q12874 501 aaKnown RBP eCLIP12.59□□□□□ -0.393e-6■■■■□ 25.6
VPS28-215ENST00000531924 KLF10Q13118 480 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 TAF11Q15544 211 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 HFEQ30201 348 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 ZNF718Q3SXZ3 478 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 ARMC4Q5T2S8 1044 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 AVPI1Q5T686 147 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 OR2T12Q8NG77 320 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 RAB39BQ96DA2 213 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 SEPHS2Q99611 448 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 RACGAP1Q9H0H5 632 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 TXNIPQ9H3M7 391 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 SAP30LQ9HAJ7 183 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 NKIRAS2Q9NYR9 191 aa12.59□□□□□ -0.39
VPS28-215ENST00000531924 NPIPB13A6NJU9 1138 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 NPIPB4C9JG80 1138 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 WNT9BO14905 357 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 RP2O75695 350 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 MMP7P09237 267 aaPredicted RBP12.58□□□□□ -0.4
VPS28-215ENST00000531924 IFI30P13284 250 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 ZNF32P17041 273 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 KDELR2P33947 212 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 CRYBB2P43320 205 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 PCBD1P61457 104 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 SPATA46Q5T0L3 261 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 THEM4Q5T1C6 240 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 ACSM5Q6NUN0 579 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 THSD4Q6ZMP0 1018 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 USP51Q70EK9 711 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 CPEB3Q8NE35 698 aaKnown RBP12.58□□□□□ -0.4
VPS28-215ENST00000531924 AKR7LQ8NHP1 331 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 FNDC8Q8TC99 324 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 ZNF418Q8TF45 676 aaPredicted RBP12.58□□□□□ -0.4
VPS28-215ENST00000531924 LIPHQ8WWY8 451 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 RAB1CQ92928 201 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 BPIFA2Q96DR5 249 aa12.58□□□□□ -0.4
VPS28-215ENST00000531924 ELMOD3Q96FG2 381 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms