RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 GHITMQ9H3K2 345 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 CCDC86Q9H6F5 360 aaKnown RBP10.79□□□□□ -0.68
NUP54-202ENST00000502850 RANBP3Q9H6Z4 567 aaPredicted RBP10.79□□□□□ -0.68
NUP54-202ENST00000502850 ELOVL3Q9HB03 270 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 GALNT9Q9HCQ5 603 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 ALKBH4Q9NXW9 302 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 SLCO1C1Q9NYB5 712 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 TAS2R8Q9NYW2 309 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 OR5V1Q9UGF6 321 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 KCNG2Q9UJ96 466 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 NXT1Q9UKK6 140 aaKnown RBP10.79□□□□□ -0.68
NUP54-202ENST00000502850 NPIPA1Q9UND3 350 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 FOXJ3Q9UPW0 622 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 GON4LQ3T8J9 2241 aa10.79□□□□□ -0.68
NUP54-202ENST00000502850 RALGAPA1Q6GYQ0 2036 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 GVINP1Q7Z2Y8 2422 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 TNRC6BQ9UPQ9 1833 aaKnown RBP10.78□□□□□ -0.68
NUP54-202ENST00000502850 TRAV6A0A075B6T7 132 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 IGLV3-32A0A0A0MS00 114 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 TRBV11-1A0A0K0K1C0 115 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 KHDRBS3O75525 346 aaKnown RBP10.78□□□□□ -0.68
NUP54-202ENST00000502850 PLGP00747 810 aaPredicted RBP10.78□□□□□ -0.68
NUP54-202ENST00000502850 ZNF823P16415 610 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 SOX2P48431 317 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 ZNF41P51814 821 aaPredicted RBP10.78□□□□□ -0.68
NUP54-202ENST00000502850 INSM1Q01101 510 aaPredicted RBP10.78□□□□□ -0.68
NUP54-202ENST00000502850 WDR38Q5JTN6 314 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 C1QL3Q5VWW1 255 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 OLFML2AQ68BL7 652 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 DEGS2Q6QHC5 323 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 H1FNTQ75WM6 255 aaPredicted RBP10.78□□□□□ -0.68
NUP54-202ENST00000502850 KANSL1Q7Z3B3 1105 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 DTX3Q8N9I9 347 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 ADPRHL1Q8NDY3 354 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 OR52N5Q8NH56 324 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 ASB10Q8WXI3 467 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 PHF21AQ96BD5 680 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 MRGPRX4Q96LA9 322 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 KLHDC3Q9BQ90 382 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 SLC26A1Q9H2B4 701 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 CHST11Q9NPF2 352 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 FANCFQ9NPI8 374 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 SERINC1Q9NRX5 453 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 PISDQ9UG56 409 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 B3GALT5Q9Y2C3 310 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 UNC13CQ8NB66 2214 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 SPTBN4Q9H254 2564 aa10.78□□□□□ -0.68
NUP54-202ENST00000502850 CPED1A4D0V7 1026 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 PEX14O75381 377 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 AQP8O94778 261 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 HRGP04196 525 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 SYPP08247 313 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 FSTP19883 344 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 FKBP2P26885 142 aaKnown RBP10.77□□□□□ -0.68
NUP54-202ENST00000502850 KIR3DL2P43630 455 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 DHPSP49366 369 aaPredicted RBP10.77□□□□□ -0.68
NUP54-202ENST00000502850 SSBP1Q04837 148 aaKnown RBP10.77□□□□□ -0.68
NUP54-202ENST00000502850 EIF2B1Q14232 305 aaKnown RBP10.77□□□□□ -0.68
NUP54-202ENST00000502850 SLC25A53Q5H9E4 307 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 ESPNLQ6ZVH7 1005 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 CPEB2Q7Z5Q1 589 aaKnown RBP10.77□□□□□ -0.68
NUP54-202ENST00000502850 PPP1R3BQ86XI6 285 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 PRSS35Q8N3Z0 413 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 LILRB4Q8NHJ6 448 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 C20orf85Q9H1P6 137 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 AUNIPQ9H7T9 357 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 DIABLOQ9NR28 239 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 RYDENQ9NUL5 291 aaKnown RBP10.77□□□□□ -0.68
NUP54-202ENST00000502850 ANKRD10Q9NXR5 420 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 KLRF1Q9NZS2 232 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 PPP4R1LQ9P1A2 415 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 ATXN7L1Q9ULK2 861 aaPredicted RBP10.77□□□□□ -0.68
NUP54-202ENST00000502850 DHDHQ9UQ10 334 aa10.77□□□□□ -0.68
NUP54-202ENST00000502850 RP1P56715 2156 aa10.77□□□□□ -0.69
NUP54-202ENST00000502850 A0A1W2PNV4 684 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 MEGF11A6BM72 1044 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 ADAM10O14672 748 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 XRCC3O43542 346 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 SNAPC5O75971 98 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 TGM6O95932 706 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 CTLA4P16410 223 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 ADRA2CP18825 462 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 TCEA1P23193 301 aaKnown RBP10.76□□□□□ -0.69
NUP54-202ENST00000502850 ID4P47928 161 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 PTH2RP49190 550 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 FBXW4P57775 412 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 TAS2R20P59543 309 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 GPR85P60893 370 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 TLE3Q04726 772 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 DMWDQ09019 674 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 RAB11BQ15907 218 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 GSG1Q2KHT4 349 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 RNASE12Q5GAN4 147 aaKnown RBP10.76□□□□□ -0.69
NUP54-202ENST00000502850 METTL11BQ5VVY1 283 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 GLT8D1Q68CQ7 371 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 GUSBP11Q6P575 273 aa10.76□□□□□ -0.69
NUP54-202ENST00000502850 ZNF782Q6ZMW2 699 aaPredicted RBP10.76□□□□□ -0.69
NUP54-202ENST00000502850 ZNF574Q6ZN55 896 aaPredicted RBP10.76□□□□□ -0.69
NUP54-202ENST00000502850 ZNF704Q6ZNC4 412 aaPredicted RBP10.76□□□□□ -0.69
NUP54-202ENST00000502850 SHISA6Q6ZSJ9 500 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms