RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 PABPC1L2AQ5JQF8 200 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 LIPNQ5VXI9 398 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 CGB2Q6NT52 195 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 TMEM154Q6P9G4 183 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 RFLNBQ8N5W9 214 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 ZNF519Q8TB69 540 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 C10orf82Q8WW14 230 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 LIPHQ8WWY8 451 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 C11orf40Q8WZ69 217 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 NABP1Q96AH0 204 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 NMD3Q96D46 503 aaKnown RBP11.66□□□□□ -0.54
COL6A3-211ENST00000491233 TPD52L3Q96J77 140 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 PRRC1Q96M27 445 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 BCL2L14Q9BZR8 327 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 LRMDAQ9H2I8 198 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 CCNB1IP1Q9NPC3 277 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 HINT3Q9NQE9 182 aaKnown RBP11.66□□□□□ -0.54
COL6A3-211ENST00000491233 SAR1AQ9NR31 198 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 MRGBPQ9NV56 204 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 TREM2Q9NZC2 230 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 GPR160Q9UJ42 338 aa11.66□□□□□ -0.54
COL6A3-211ENST00000491233 IGKV1D-43A0A0B4J1Z2 117 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 NPIPB13A6NJU9 1138 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 NPIPB4C9JG80 1138 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 NPPAP01160 153 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 MSMBP08118 114 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 TSPAN19P0C672 248 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 IFI30P13284 250 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 ZNF32P17041 273 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 ITGA2P17301 1181 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 CCNOP22674 350 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 RAD52P43351 418 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 UCP2P55851 309 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 TMEM33P57088 247 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 CCL8P80075 99 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 PCGF3Q3KNV8 242 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 ALG10Q5BKT4 473 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 PCYOX1LQ8NBM8 494 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 CPEB3Q8NE35 698 aaKnown RBP11.65□□□□□ -0.54
COL6A3-211ENST00000491233 OR2T12Q8NG77 320 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 OR1J1Q8NGS3 322 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 NSMAFQ92636 917 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 GTF3AQ92664 365 aaKnown RBP11.65□□□□□ -0.54
COL6A3-211ENST00000491233 TMEM186Q96B77 213 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 KCNN2Q9H2S1 579 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 TXNIPQ9H3M7 391 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 SIAEQ9HAT2 523 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 SMURF2Q9HAU4 748 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 SLCO1C1Q9NYB5 712 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 HIF3AQ9Y2N7 669 aa11.65□□□□□ -0.54
COL6A3-211ENST00000491233 LOC100653049A0A140TA62 436 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 MGRN1O60291 552 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 KRT34O76011 436 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 GAAP10253 952 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 NR2C1P13056 603 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 DRD4P21917 467 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 STOMP27105 288 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 KDELR2P33947 212 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 ST3GAL3Q11203 375 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 LAPTM4AQ15012 233 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 SGCAQ16586 387 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 AVPI1Q5T686 147 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 IGFN1Q86VF2 1251 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 MICU2Q8IYU8 434 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 OR51F2Q8NH61 342 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 AKR7LQ8NHP1 331 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 ALG12Q9BV10 488 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 METTL17Q9H7H0 456 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-211ENST00000491233 HIF1ANQ9NWT6 349 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 GID8Q9NWU2 228 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 A4GNTQ9UNA3 340 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 GRIP1Q9Y3R0 1128 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 CAPN7Q9Y6W3 813 aa11.64□□□□□ -0.55
COL6A3-211ENST00000491233 ELOVL7A1L3X0 281 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 GMNCA6NCL1 334 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 HAX1O00165 279 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 TPD52L2O43399 206 aaKnown RBP11.63□□□□□ -0.55
COL6A3-211ENST00000491233 IGHMP01871 453 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 MT-ND5P03915 603 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 FUT4P22083 530 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 WNT5AP41221 380 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 YAP1P46937 504 aaKnown RBP11.63□□□□□ -0.55
COL6A3-211ENST00000491233 LMO4P61968 165 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 ERVK-25P63136 954 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 MVKQ03426 396 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 SPATA46Q5T0L3 261 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 SHQ1Q6PI26 577 aaKnown RBP11.63□□□□□ -0.55
COL6A3-211ENST00000491233 SLC25A47Q6Q0C1 308 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 RFPL4BQ6ZWI9 263 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 MEX3DQ86XN8 651 aaKnown RBP11.63□□□□□ -0.55
COL6A3-211ENST00000491233 ZNF101Q8IZC7 436 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 OFCC1Q8IZS5 231 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 CLDN22Q8N7P3 220 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 IPCEF1Q8WWN9 437 aaPredicted RBP11.63□□□□□ -0.55
COL6A3-211ENST00000491233 RCN3Q96D15 328 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 BPIFA2Q96DR5 249 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 POM121L2Q96KW2 1035 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 LRRC37BQ96QE4 947 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 NKIRAS2Q9NYR9 191 aa11.63□□□□□ -0.55
COL6A3-211ENST00000491233 GMPR2Q9P2T1 348 aaKnown RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms