RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 TMEM225Q6GV28 225 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 OR4F3Q6IEY1 312 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 TMEM179Q6ZVK1 233 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 TEX9Q8N6V9 391 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 CEP112Q8N8E3 955 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 OR4K5Q8NGD3 323 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 OR52M1Q8NGK5 317 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 COQ8AQ8NI60 647 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 RSPH1Q8WYR4 309 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 CREB3L1Q96BA8 519 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 TTC25Q96NG3 672 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 CAMK2N2Q96S95 79 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 ZNF607Q96SK3 696 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 ERP44Q9BS26 406 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 SLC25A2Q9BXI2 301 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 PALMDQ9NP74 551 aa1.22□□□□□ -2.21
VPS50-216ENST00000484954 FARSBQ9NSD9 589 aaKnown RBP1.22□□□□□ -2.21
VPS50-216ENST00000484954 SDAD1Q9NVU7 687 aaKnown RBP eCLIP1.22□□□□□ -2.21
VPS50-216ENST00000484954 TSSC4Q9Y5U2 329 aaPredicted RBP1.22□□□□□ -2.21
VPS50-216ENST00000484954 PNPLA6Q8IY17 1366 aa1.21□□□□□ -2.21
VPS50-216ENST00000484954 CDHR2Q9BYE9 1310 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 ATP10AO60312 1499 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 UBXN8O00124 270 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 ARPC3O15145 178 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 FCMRO60667 390 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 SPAG6O75602 509 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 IDH1O75874 414 aaKnown RBP1.21□□□□□ -2.22
VPS50-216ENST00000484954 OR7A10O76100 309 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 IGHDP01880 384 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 FGF1P05230 155 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 UGT2B4P06133 528 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 CT62P0C5K7 136 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 UBTFL6P0CB48 400 aaPredicted RBP1.21□□□□□ -2.22
VPS50-216ENST00000484954 FDFT1P37268 417 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 CEACAM6P40199 344 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 PRRX1P54821 245 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 UBE2HP62256 183 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 OGDHQ02218 1023 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 ZNF92Q03936 586 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 IFT88Q13099 833 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 BAMBIQ13145 260 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 TAF7Q15545 349 aaPredicted RBP1.21□□□□□ -2.22
VPS50-216ENST00000484954 HSP90AA5PQ58FG0 334 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 PDZK1Q5T2W1 519 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 ARL9Q6T311 187 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 PLET1Q6UQ28 207 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 UQCC3Q6UW78 93 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 ENPP6Q6UWR7 440 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 DHDDSQ86SQ9 333 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 LHFPL3Q86UP9 236 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 CALHM1Q8IU99 346 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 VSTM4Q8IW00 320 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 HSD17B11Q8NBQ5 300 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 STEAP2Q8NFT2 490 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 C17orf50Q8WW18 174 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 EMG1Q92979 244 aaKnown RBP1.21□□□□□ -2.22
VPS50-216ENST00000484954 FAM3DQ96BQ1 224 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 FLYWCH2Q96CP2 140 aaKnown RBP1.21□□□□□ -2.22
VPS50-216ENST00000484954 TRIM44Q96DX7 344 aaPredicted RBP1.21□□□□□ -2.22
VPS50-216ENST00000484954 TCHPQ9BT92 498 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 DHX35Q9H5Z1 703 aaKnown RBP1.21□□□□□ -2.22
VPS50-216ENST00000484954 CTSFQ9UBX1 484 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 SH3BGRL2Q9UJC5 107 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 BLOC1S6Q9UL45 172 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 KIF3AQ9Y496 699 aa1.21□□□□□ -2.22
VPS50-216ENST00000484954 TRAV39A0A0B4J263 110 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 A0A1B0GW55 424 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 ZNF716A6NP11 495 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 DNASE2O00115 360 aaPredicted RBP1.2□□□□□ -2.22
VPS50-216ENST00000484954 BPY2O14599 106 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 YIF1AO95070 293 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 HLA-DQA1P01909 254 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 DUX4L2P0CJ85 424 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 DUX4L3P0CJ86 424 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 DUX4L5P0CJ88 424 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 DUX4L6P0CJ89 424 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 DUX4L7P0CJ90 424 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 DESP17661 470 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 ATP5C1P36542 298 aaKnown RBP1.2□□□□□ -2.22
VPS50-216ENST00000484954 SERPINB5P36952 375 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 AQP2P41181 271 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 ARFIP1P53367 373 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 ATP1B3P54709 279 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 TCP10Q12799 353 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 TEX43Q6ZNM6 134 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 HDDC2Q7Z4H3 204 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 PRSS58Q8IYP2 241 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 ST20-AS1Q8NBB2 130 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 LKAAEAR1Q8TD35 194 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 THRSPQ92748 146 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 TVP23CQ96ET8 276 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 COQ2Q96H96 371 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 SENP8Q96LD8 212 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 SH3GL3Q99963 347 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 ANGPTL4Q9BY76 406 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 PPA2Q9H2U2 334 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 RIBC2Q9H4K1 309 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 POLE4Q9NR33 117 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 DUX4Q9UBX2 424 aa1.2□□□□□ -2.22
VPS50-216ENST00000484954 IKBKGQ9Y6K9 419 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms