RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 TACR3P29371 465 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 CORO6Q6QEF8 472 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 ACOT7LQ6ZUV0 252 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 COMTD1Q86VU5 262 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 FAM71E2Q8N5Q1 922 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 OR2A1Q8NGT9 310 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 FAM213BQ8TBF2 198 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 THRSPQ92748 146 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 TGM7Q96PF1 710 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 OR52A5Q9H2C5 316 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 TAS2R4Q9NYW5 299 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 LRIT1Q9P2V4 623 aa12.35□□□□□ -0.43
USP42-206ENST00000479544 PRRT4C9JH25 899 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 NDUFB6O95139 128 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 NSA2O95478 260 aaKnown RBP12.34□□□□□ -0.43
USP42-206ENST00000479544 CD14P08571 375 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 GABRR1P24046 479 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 DIO1P49895 249 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 MNX1P50219 401 aaPredicted RBP12.34□□□□□ -0.43
USP42-206ENST00000479544 ATP1B3P54709 279 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 GLO1Q04760 184 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 GPM6BQ13491 265 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 ZNF765Q7L2R6 523 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 RAB7BQ96AH8 199 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 ZNF578Q96N58 590 aaPredicted RBP12.34□□□□□ -0.43
USP42-206ENST00000479544 NPAS1Q99742 590 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 ANKRD19PQ9H560 264 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 SMCO4Q9NRQ5 59 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 TP53BP1Q12888 1972 aaPredicted RBP12.34□□□□□ -0.43
USP42-206ENST00000479544 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.34□□□□□ -0.43
USP42-206ENST00000479544 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.34□□□□□ -0.43
USP42-206ENST00000479544 SLC22A23A1A5C7 686 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 C2orf72A6NCS6 295 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 SULT1B1O43704 296 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 NKX6-1P78426 367 aaPredicted RBP12.34□□□□□ -0.43
USP42-206ENST00000479544 EIF2S3LQ2VIR3 472 aaKnown RBP12.34□□□□□ -0.43
USP42-206ENST00000479544 METRNLQ641Q3 311 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 MRM1Q6IN84 353 aaKnown RBP12.34□□□□□ -0.43
USP42-206ENST00000479544 SSX9Q7RTT3 188 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 PLPP6Q8IY26 295 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 RFLNBQ8N5W9 214 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 NUBPLQ8TB37 319 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 RSRP1Q9BUV0 290 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 C2orf42Q9NWW7 574 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 P2RX6O15547 441 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 ZNF354AO60765 605 aaPredicted RBP12.34□□□□□ -0.43
USP42-206ENST00000479544 SEMG1P04279 462 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 ALDH3B1P43353 468 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 MEF2DQ14814 521 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 IAH1Q2TAA2 248 aaPredicted RBP12.34□□□□□ -0.43
USP42-206ENST00000479544 PGAM5Q96HS1 289 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 WDR92Q96MX6 357 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 SLC25A21Q9BQT8 299 aaPredicted RBP12.34□□□□□ -0.43
USP42-206ENST00000479544 KCNG2Q9UJ96 466 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 SIGLEC7Q9Y286 467 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 LOC100289279A0A1B0GTE1 492 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 C7orf66A4D0T2 115 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 POM121BA6NF01 834 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 TMEM212A6NML5 194 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 SNRPGP15A8MWD9 76 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 C17orf105B2RV13 164 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 DCTN6O00399 190 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 GLCEO94923 617 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 DAOP14920 347 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 MGMTP16455 207 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 BAP18Q8IXM2 172 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 ETFBKMTQ8IXQ9 262 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 MIB2Q96AX9 1013 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 CMBLQ96DG6 245 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 SLC25A32Q9H2D1 315 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 FN3KRPQ9HA64 309 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 IL21Q9HBE4 155 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 SPACA1Q9HBV2 294 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 PRODH2Q9UF12 536 aa12.34□□□□□ -0.43
USP42-206ENST00000479544 ZNF230Q9UIE0 474 aaPredicted RBP12.34□□□□□ -0.43
USP42-206ENST00000479544 RHPN2P1A8MT19 583 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 SULT1C2O00338 296 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 KIAA0141Q14154 515 aaPredicted RBP12.33□□□□□ -0.44
USP42-206ENST00000479544 ETFDHQ16134 617 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 PLEKHN1Q494U1 663 aaPredicted RBP12.33□□□□□ -0.44
USP42-206ENST00000479544 MARCH1Q8TCQ1 289 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 ISOC2Q96AB3 205 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 SIGLEC11Q96RL6 698 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 APOOQ9BUR5 198 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 PBDC1Q9BVG4 233 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 ZNF638Q14966 1978 aaKnown RBP12.33□□□□□ -0.44
USP42-206ENST00000479544 SERPINA2P20848 420 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 CCR2P41597 374 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 BDH1Q02338 343 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 DCAF12L2Q5VW00 463 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 KIRREL2Q6UWL6 708 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 SUMF2Q8NBJ7 301 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 SUMF1Q8NBK3 374 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 ZNF775Q96BV0 537 aaPredicted RBP12.33□□□□□ -0.44
USP42-206ENST00000479544 ADGRL4Q9HBW9 690 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 ZFP57Q9NU63 452 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 PRR13Q9NZ81 148 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 OPN4Q9UHM6 478 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 CENPVL1A0A0U1RR11 272 aa12.33□□□□□ -0.44
USP42-206ENST00000479544 TLX3O43711 291 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms