RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 RPS3AP61247 264 aaKnown RBP5.9□□□□□ -1.46
USP48-208ENST00000479177 LCN6P62502 163 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 RAP1AP62834 184 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 CSNK2BP67870 215 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 SLC35A2P78381 396 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 RUNX1T1Q06455 604 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 APOFQ13790 326 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 C1DQ13901 141 aaKnown RBP5.9□□□□□ -1.46
USP48-208ENST00000479177 SLC17A1Q14916 467 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 EEF1A1P5Q5VTE0 462 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 PLBD1Q6P4A8 553 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 ETV3LQ6ZN32 361 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 FCRLAQ7L513 359 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 HDDC2Q7Z4H3 204 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 FGD2Q7Z6J4 655 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 GPAT4Q86UL3 456 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 GID4Q8IVV7 300 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 ZIC4Q8N9L1 334 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 SYT8Q8NBV8 401 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 NOXO1Q8NFA2 376 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 BPIFB6Q8NFQ5 453 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 OR9K2Q8NGE7 335 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 OR9Q1Q8NGQ5 310 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 FNDC9Q8TBE3 224 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 RNF128Q8TEB7 428 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 ROBO4Q8WZ75 1007 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 SGCDQ92629 289 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 PTP4A1Q93096 173 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 SARAFQ96BY9 339 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 TXNDC15Q96J42 360 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 Q96MT0 163 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 GPR137Q96N19 417 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 SIGLEC11Q96RL6 698 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 NMNAT3Q96T66 252 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 TUBA1CQ9BQE3 449 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 ALG12Q9BV10 488 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 SF3B5Q9BWJ5 86 aaKnown RBP5.9□□□□□ -1.46
USP48-208ENST00000479177 MED29Q9NX70 200 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 PAQR5Q9NXK6 330 aaPredicted RBP5.9□□□□□ -1.46
USP48-208ENST00000479177 CNOT2Q9NZN8 540 aaKnown RBP5.9□□□□□ -1.46
USP48-208ENST00000479177 VSX1Q9NZR4 365 aaPredicted RBP5.9□□□□□ -1.46
USP48-208ENST00000479177 KLHL13Q9P2N7 655 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 CLCF1Q9UBD9 225 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 GRHPRQ9UBQ7 328 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 PSORS1C1Q9UIG5 152 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 ING1Q9UK53 422 aaPredicted RBP5.9□□□□□ -1.46
USP48-208ENST00000479177 MCTS1Q9ULC4 181 aaKnown RBP5.9□□□□□ -1.46
USP48-208ENST00000479177 CAMK2AQ9UQM7 478 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 ZNF175Q9Y473 711 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 PMF1-BGLAPU3KQ54 211 aa5.9□□□□□ -1.46
USP48-208ENST00000479177 FREM1Q5H8C1 2179 aa5.9□□□□□ -1.47
USP48-208ENST00000479177 INTS1Q8N201 2190 aaKnown RBP5.9□□□□□ -1.47
USP48-208ENST00000479177 MYO18BQ8IUG5 2567 aa5.9□□□□□ -1.47
USP48-208ENST00000479177 CACNA1CQ13936 2221 aa5.9□□□□□ -1.47
USP48-208ENST00000479177 SPENQ96T58 3664 aaKnown RBP5.89□□□□□ -1.47
USP48-208ENST00000479177 IGKV3D-15A0A087WSY6 115 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 A0A1B0GTH9 108 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 SLC22A23A1A5C7 686 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 PRSS37A4D1T9 235 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 EFCAB10A6NFE3 127 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 TRIM64CA6NLI5 447 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 EIF4E1BA6NMX2 242 aaKnown RBP5.89□□□□□ -1.47
USP48-208ENST00000479177 CLCA1A8K7I4 914 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 NPIPA2E9PIF3 369 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 NPIPA3F8WFD2 350 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 M0R3G1 203 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 ARHGEF9O43307 516 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 TRMUO75648 421 aaKnown RBP5.89□□□□□ -1.47
USP48-208ENST00000479177 AQP8O94778 261 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 SYNGR4O95473 234 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 RENP00797 406 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 IGHG1P01857 330 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 MT-ND2P03891 347 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 GYPBP06028 91 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 PGA4P0DJD7 388 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 PGA3P0DJD8 388 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 CLUP10909 449 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 PIPP12273 146 aaPredicted RBP5.89□□□□□ -1.47
USP48-208ENST00000479177 ZNF43P17038 809 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 SPI1P17947 270 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 TDGF1P3P51864 188 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 SUMO1P63165 101 aaKnown RBP5.89□□□□□ -1.47
USP48-208ENST00000479177 DBPQ10586 325 aaPredicted RBP5.89□□□□□ -1.47
USP48-208ENST00000479177 KLRB1Q12918 225 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 TMED1Q13445 227 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 PON3Q15166 354 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 CR1LQ2VPA4 569 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 PRR30Q53SZ7 412 aaPredicted RBP5.89□□□□□ -1.47
USP48-208ENST00000479177 TMEM225Q6GV28 225 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 ZNF773Q6PK81 442 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 C19orf48Q6RUI8 117 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 PLXDC2Q6UX71 529 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 CREB3L2Q70SY1 520 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 AHSA2Q719I0 299 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 MEPCEQ7L2J0 689 aaKnown RBP5.89□□□□□ -1.47
USP48-208ENST00000479177 ADGRE4PQ86SQ3 457 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 PM20D2Q8IYS1 436 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 TMEM123Q8N131 208 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 GHDCQ8N2G8 530 aa5.89□□□□□ -1.47
USP48-208ENST00000479177 ZNF540Q8NDQ6 660 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms