RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 GAL3ST1Q99999 423 aa11.29□□□□□ -0.6
VCL-205ENST00000478896 SUCNR1Q9BXA5 334 aa11.29□□□□□ -0.6
VCL-205ENST00000478896 INIPQ9NRY2 104 aa11.29□□□□□ -0.6
VCL-205ENST00000478896 STX18Q9P2W9 335 aaKnown RBP11.29□□□□□ -0.6
VCL-205ENST00000478896 EIF3KQ9UBQ5 218 aaKnown RBP11.29□□□□□ -0.6
VCL-205ENST00000478896 PLSCR5A0PG75 271 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 SPRY3O43610 288 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 PLPP2O43688 288 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 LYPD3O95274 346 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 SLC2A10O95528 541 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 AVPP01185 164 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 IGHV2-5P01817 119 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 MT-ND1P03886 318 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 ACADSP16219 412 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 ADRA2CP18825 462 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 STOMP27105 288 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 PCGF2P35227 344 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 LIMS1P48059 325 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 CD47Q08722 323 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 ZNF718Q3SXZ3 478 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 PABPC1L2AQ5JQF8 200 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 SPATA46Q5T0L3 261 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 C1QL2Q7Z5L3 287 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 TSPYL5Q86VY4 417 aaPredicted RBP11.28□□□□□ -0.6
VCL-205ENST00000478896 DPP10Q8N608 796 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 NANPQ8TBE9 248 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 FAM216AQ8WUB2 273 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 CCL17Q92583 94 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 NSMAFQ92636 917 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 SGTBQ96EQ0 304 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 THOC1Q96FV9 657 aaKnown RBP11.28□□□□□ -0.6
VCL-205ENST00000478896 ZNF426Q9BUY5 554 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 TMPRSS13Q9BYE2 586 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 PCDHAC1Q9H158 963 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 MEPEQ9NQ76 525 aaPredicted RBP11.28□□□□□ -0.6
VCL-205ENST00000478896 UBAP1Q9NZ09 502 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 CACNG2Q9Y698 323 aa11.28□□□□□ -0.6
VCL-205ENST00000478896 CENPBD1B2RD01 187 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 J3QLI3 93 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 MGRN1O60291 552 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 DEAF1O75398 565 aaPredicted RBP11.27□□□□□ -0.61
VCL-205ENST00000478896 OR7A10O76100 309 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 IGHV3-13P01766 116 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 MMP7P09237 267 aaPredicted RBP11.27□□□□□ -0.61
VCL-205ENST00000478896 NR2C1P13056 603 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 ZNF32P17041 273 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 FUT1P19526 365 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 MAKP20794 623 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 CDAP32320 146 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 AQP2P41181 271 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 COMPP49747 757 aaPredicted RBP11.27□□□□□ -0.61
VCL-205ENST00000478896 GDI2P50395 445 aaKnown RBP11.27□□□□□ -0.61
VCL-205ENST00000478896 UGT2B15P54855 530 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 TOP3AQ13472 1001 aaPredicted RBP11.27□□□□□ -0.61
VCL-205ENST00000478896 SGCAQ16586 387 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 HIST3H3Q16695 136 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 FAM209AQ5JX71 171 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 BEND6Q5SZJ8 279 aaPredicted RBP11.27□□□□□ -0.61
VCL-205ENST00000478896 C10orf128Q5T292 105 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 C1orf229Q6ZS94 237 aaPredicted RBP11.27□□□□□ -0.61
VCL-205ENST00000478896 RETREG3Q86VR2 466 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 TREML1Q86YW5 311 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 CPEB3Q8NE35 698 aaKnown RBP11.27□□□□□ -0.61
VCL-205ENST00000478896 TMEM255BQ8WV15 326 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 IPCEF1Q8WWN9 437 aaPredicted RBP11.27□□□□□ -0.61
VCL-205ENST00000478896 SLC6A7Q99884 636 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 PRSS27Q9BQR3 290 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 MRPL13Q9BYD1 178 aaKnown RBP11.27□□□□□ -0.61
VCL-205ENST00000478896 KAT8Q9H7Z6 458 aaKnown RBP11.27□□□□□ -0.61
VCL-205ENST00000478896 SIAEQ9HAT2 523 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 SH3GLB1Q9Y371 365 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 TANC2Q9HCD6 1990 aa11.27□□□□□ -0.61
VCL-205ENST00000478896 TMEM89A2RUT3 159 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 C5orf49A4QMS7 147 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 GMNCA6NCL1 334 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 IGHV1-46P01743 117 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 GATA3P23771 443 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 MPV17P39210 176 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 ERVK-25P63136 954 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 MRPS34P82930 218 aaKnown RBP11.26□□□□□ -0.61
VCL-205ENST00000478896 FMODQ06828 376 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 SLC3A1Q07837 685 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 VMACQ2NL98 169 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 THEM4Q5T1C6 240 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 NKAIN4Q8IVV8 208 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 ZNF101Q8IZC7 436 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 AKR7LQ8NHP1 331 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 SGMS2Q8NHU3 365 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 SLC25A40Q8TBP6 338 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 ST7LQ8TDW4 575 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 TMEM239Q8WW34 195 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 EGLN1Q9GZT9 426 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 C7orf69Q9H7B7 122 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 NANOGQ9H9S0 305 aa11.26□□□□□ -0.61
VCL-205ENST00000478896 SHOX2O60902 331 aaPredicted RBP11.25□□□□□ -0.61
VCL-205ENST00000478896 TNFRSF1BP20333 461 aa11.25□□□□□ -0.61
VCL-205ENST00000478896 WNT5AP41221 380 aa11.25□□□□□ -0.61
VCL-205ENST00000478896 RBM34P42696 430 aaKnown RBP11.25□□□□□ -0.61
VCL-205ENST00000478896 GUCA1AP43080 201 aaPredicted RBP11.25□□□□□ -0.61
VCL-205ENST00000478896 ARFIP2P53365 341 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms