RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ZNF99A8MXY4 864 aaPredicted RBP3.61□□□□□ -1.83
UPF3B-203ENST00000478840 H3BNH8 94 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 PEX7O00628 323 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 ZBTB5O15062 677 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 SPOPO43791 374 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 TRBC1P01850 177 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 DCNP07585 359 aaKnown RBP3.61□□□□□ -1.83
UPF3B-203ENST00000478840 SMIM10L1P0DMW3 83 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 STX17P56962 302 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 CARD18P57730 90 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 KRTAP10-6P60371 365 aaPredicted RBP3.61□□□□□ -1.83
UPF3B-203ENST00000478840 STXBP1P61764 594 aaKnown RBP3.61□□□□□ -1.83
UPF3B-203ENST00000478840 RPS21P63220 83 aaKnown RBP3.61□□□□□ -1.83
UPF3B-203ENST00000478840 TMED1Q13445 227 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 IL17AQ16552 155 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 LCN12Q6JVE5 192 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 COX15Q7KZN9 410 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 PROKR2Q8NFJ6 384 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 NPBQ8NG41 125 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 OR2A1Q8NGT9 310 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 FAM151AQ8WW52 585 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 DCUN1D4Q92564 292 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 NAT6Q93015 286 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 TOP1MTQ969P6 601 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 SMIM10Q96HG1 83 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 ECSITQ9BQ95 431 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 CEMIPQ8WUJ3 1361 aa3.61□□□□□ -1.83
UPF3B-203ENST00000478840 NEURL4Q96JN8 1562 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 IGKV3D-20A0A0C4DH25 116 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 F6UB75 175 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 H0YHG0 523 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 H7C0C1 242 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 BCKDKO14874 412 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 UTS2O95399 124 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 AIFM1O95831 613 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 MGMTP16455 207 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 CD82P27701 267 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 OR1E1P30953 314 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 SLC1A2P43004 574 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 KRTAP10-7P60409 375 aaPredicted RBP3.6□□□□□ -1.83
UPF3B-203ENST00000478840 SP4Q02446 784 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 MXD1Q05195 221 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 TWF1Q12792 350 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 HERPUD1Q15011 391 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 ZNF726P1Q15940 193 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 ZNF239Q16600 458 aaKnown RBP3.6□□□□□ -1.83
UPF3B-203ENST00000478840 COA6Q5JTJ3 125 aaKnown RBP3.6□□□□□ -1.83
UPF3B-203ENST00000478840 C6orf89Q6UWU4 347 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 TMEM179Q6ZVK1 233 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 FAM122BQ7Z309 247 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 TMEM150AQ86TG1 271 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 LRRC75AQ8NAA5 344 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 NUBPLQ8TB37 319 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 CERS2Q96G23 380 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 AURKBQ96GD4 344 aaPredicted RBP3.6□□□□□ -1.83
UPF3B-203ENST00000478840 DNAJC1Q96KC8 554 aaKnown RBP3.6□□□□□ -1.83
UPF3B-203ENST00000478840 SERPINB12Q96P63 405 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 RASL11BQ9BPW5 248 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 SLC7A5P2Q9GIP4 190 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 NXF3Q9H4D5 531 aaKnown RBP3.6□□□□□ -1.83
UPF3B-203ENST00000478840 RPF2Q9H7B2 306 aaKnown RBP3.6□□□□□ -1.83
UPF3B-203ENST00000478840 RETNQ9HD89 108 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 MYOZ2Q9NPC6 264 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 MMP26Q9NRE1 261 aa3.6□□□□□ -1.83
UPF3B-203ENST00000478840 ABCA7Q8IZY2 2146 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 A0A1B0GUH1 482 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 TMEM120BA0PK00 339 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 EMC8O43402 210 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 DPM1O60762 260 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 ICOSLGO75144 302 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 SRP72O76094 671 aaKnown RBP3.59□□□□□ -1.83
UPF3B-203ENST00000478840 LY6G6DO95868 133 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 IFNW1P05000 195 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 CLTAP09496 248 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 CRISP2P16562 243 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 ZBTB25P24278 435 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 HRH1P35367 487 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 CTRLP40313 264 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 BCAP31P51572 246 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 NUTF2P61970 127 aaKnown RBP3.59□□□□□ -1.83
UPF3B-203ENST00000478840 DAZ2Q13117 558 aaKnown RBP3.59□□□□□ -1.83
UPF3B-203ENST00000478840 OR7A5Q15622 319 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 SPECC1LQ69YQ0 1117 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 FRMPD2BQ6IN97 320 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 ACP7Q6ZNF0 438 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 MRPL21Q7Z2W9 205 aaKnown RBP3.59□□□□□ -1.83
UPF3B-203ENST00000478840 CMTM8Q8IZV2 173 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 LKAAEAR1Q8TD35 194 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 MCOLN3Q8TDD5 553 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 ASB9Q96DX5 294 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 IMMP1LQ96LU5 166 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 CFAP53Q96M91 514 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 CSPG4P5Q96PW8 444 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 FBXO44Q9H4M3 255 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 DAZ3Q9NR90 486 aaKnown RBP3.59□□□□□ -1.83
UPF3B-203ENST00000478840 CTPS2Q9NRF8 586 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 CLN6Q9NWW5 311 aa3.59□□□□□ -1.83
UPF3B-203ENST00000478840 WDR62O43379 1518 aa3.59□□□□□ -1.84
UPF3B-203ENST00000478840 A0A1W2PPV4 95 aa3.58□□□□□ -1.84
UPF3B-203ENST00000478840 GJE1A6NN92 205 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms