RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 LOC100653049A0A140TA62 436 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 VSTM5A8MXK1 200 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 FAM220BPB1ANY3 271 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 B9A039 149 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 KPNA4O00629 521 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 RNF13O43567 381 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 TLX2O43763 284 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 CD5LO43866 347 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 ENTPD5O75356 428 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 KRT34O76011 436 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 SEC14L2O76054 403 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 LYPD3O95274 346 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 THY1P04216 161 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 SCG5P05408 212 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 OR4A8P0C604 315 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 UMPSP11172 480 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 CD79AP11912 226 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 SLC25A16P16260 332 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 CALCRP30988 508 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 RBM34P42696 430 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 CSNK1A1P48729 337 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 IDH3GP51553 393 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 TAS2R41P59536 307 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 GUCY1A3Q02108 690 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 ZP4Q12836 540 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 CAMK2DQ13557 499 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 EFNB3Q15768 340 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 ADIPOQQ15848 244 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 GSG1Q2KHT4 349 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 MST1LQ2TV78 715 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 NHLRC1Q6VVB1 395 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF813Q6ZN06 617 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 DEF8Q6ZN54 512 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 Q6ZPA2 131 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 SLC35D2Q76EJ3 337 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF627Q7L945 461 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 SLC46A3Q7Z3Q1 461 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 NANOGNBQ7Z5D8 188 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 ARPINQ7Z6K5 226 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 MDP1Q86V88 176 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 CARM1Q86X55 608 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF525Q8N782 197 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 OR6X1Q8NH79 312 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 SVIPQ8NHG7 77 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 C10orf82Q8WW14 230 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF566Q969W8 418 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 PPP1R14AQ96A00 147 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF583Q96ND8 569 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 FOXB1Q99853 325 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF426Q9BUY5 554 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 PLK3Q9H4B4 646 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 DENND2DQ9H6A0 471 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF442Q9H7R0 627 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 MYOZ1Q9NP98 299 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 MED4Q9NPJ6 270 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 TAS2R5Q9NYW4 299 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 GLTPQ9NZD2 209 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 AP3M1Q9Y2T2 418 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 SONP18583 2426 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 ABCA2Q9BZC7 2435 aa5.88□□□□□ -1.47
CCDC88A-213ENST00000476903 IGHV2OR16-5A0A0B4J2B6 119 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 A0A1W2PRG6 482 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 ELOVL7A1L3X0 281 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 NDUFS8O00217 210 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 TBX1O43435 398 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 CCDC22O60826 627 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 CRLF1O75462 422 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 OR7A10O76100 309 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 UBL3O95164 117 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 OR5F1O95221 314 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 RAB36O95755 333 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 IGF2P01344 180 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 IGHG1P01857 330 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 HLA-HP01893 362 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 MT-ND1P03886 318 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 ERCC1P07992 297 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 ASAH2BP0C7U1 165 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 THRBP10828 461 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 B4GALT1P15291 398 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 ZNF14P17017 642 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 TNFRSF1BP20333 461 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 NPR2P20594 1047 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 IFNA8P32881 189 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 KDELR2P33947 212 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 THBS4P35443 961 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 PTDSS1P48651 473 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 PPOXP50336 477 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 PDLIM4P50479 330 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 HGFACQ04756 655 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 LOXL1Q08397 574 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 LSAMPQ13449 338 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 MELKQ14680 651 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 FXNQ16595 210 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 LRRC23Q53EV4 343 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 CCDC92Q53HC0 331 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 PIWIL3Q7Z3Z3 882 aaKnown RBP5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 HDDC2Q7Z4H3 204 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 MYPOPQ86VE0 399 aaPredicted RBP5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 PRIMA1Q86XR5 153 aa5.87□□□□□ -1.47
CCDC88A-213ENST00000476903 ANKRD13BQ86YJ7 626 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms