RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 TSSK3Q96PN8 268 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 SLC29A1Q99808 456 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 FAM192AQ9GZU8 254 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 VCXQ9H320 206 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 OR51M1Q9H341 326 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF223Q9UK11 482 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 PITPNC1Q9UKF7 332 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 CENPJQ9HC77 1338 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 NSD2O96028 1365 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 USP47Q96K76 1375 aa1.8□□□□□ -2.12
CCDC88A-212ENST00000474059 ARHGAP21Q5T5U3 1957 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 SCN2AQ99250 2005 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 A0A096LNJ9 63 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 TRAV39A0A0B4J263 110 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 A0A0B4J2A0 478 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 CIB4A0PJX0 185 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 SMCO3A2RU48 225 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 LRRIQ3A6PVS8 624 aaPredicted RBP1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 SPECC1L-ADORA2AF8WAN1 911 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 CDC7O00311 574 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 HMMRO75330 724 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 EEDO75530 441 aaKnown RBP1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 OR2J3O76001 311 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 CLPXO76031 633 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 UTS2O95399 124 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 FTH1P02794 183 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 ZDHHC11BP0C7U3 371 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF250P15622 560 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 OMGP23515 440 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 HRH1P35367 487 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 AQP2P41181 271 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 HERVK_113P61574 105 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 NUTF2P61970 127 aaKnown RBP1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 TGM3Q08188 693 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 CUL2Q13617 745 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 ALKBH6Q3KRA9 238 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 TSPO2Q5TGU0 170 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF691Q5VV52 312 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 LRRC66Q68CR7 880 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 SPECC1LQ69YQ0 1117 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 METAP1DQ6UB28 335 aaPredicted RBP1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF493Q6ZR52 646 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 TMEM179Q6ZVK1 233 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 STRADAQ7RTN6 431 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 MMAAQ8IVH4 418 aaKnown RBP1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 BBS5Q8N3I7 341 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 STPG2Q8N412 459 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 Q8N976 141 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 OR10R2Q8NGX6 335 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 SLC7A13Q8TCU3 470 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 CD300LFQ8TDQ1 290 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 ZFP90Q8TF47 636 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 PIK3IP1Q96FE7 263 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 CEP170P1Q96L14 293 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF578Q96N58 590 aaPredicted RBP1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 WFIKKN1Q96NZ8 548 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 TAAR1Q96RJ0 339 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 P2RX4Q99571 388 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 MRPL37Q9BZE1 423 aaKnown RBP1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 NEUROG2Q9H2A3 272 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 TPK1Q9H3S4 243 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 SHPKQ9UHJ6 478 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 ING4Q9UNL4 249 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 MRPS18BQ9Y676 258 aaKnown RBP1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 MYO10Q9HD67 2058 aa1.79□□□□□ -2.12
CCDC88A-212ENST00000474059 AKNAQ7Z591 1439 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 CARMIL3Q8ND23 1372 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 IGLV11-55A0A075B6I3 123 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 TRBV11-1A0A0K0K1C0 115 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF816-ZNF321PA0A0X1KG74 233 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 SMCO2A6NFE2 343 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 ANKRD63C9JTQ0 380 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 C9JVG2 144 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 AIM2O14862 343 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 LSM1O15116 133 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 AIFM1O95831 613 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 AGTP01019 485 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 PLEKP08567 350 aaPredicted RBP1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 GNAO1P09471 354 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 CALM1P0DP23 149 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 CALM2P0DP24 149 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 CALM3P0DP25 149 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 FOXN2P32314 431 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 TNNT2P45379 298 aaPredicted RBP1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 PRRX1P54821 245 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 CCNA1P78396 465 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 SLC7A9P82251 487 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 SLC25A11Q02978 314 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 TWF1Q12792 350 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 GGTLC2Q14390 218 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 CLINT1Q14677 625 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 RCN1Q15293 331 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 CHRNA6Q15825 494 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 POU2AF1Q16633 256 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 ZSCAN26Q16670 478 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 SOHLH1Q5JUK2 328 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 CCNJQ5T5M9 372 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 CERS6Q6ZMG9 384 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 LINC01551Q86U37 167 aa1.78□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF502Q8TBZ5 544 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms