RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 HIST2H2BCQ6DN03 193 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 FAHD1Q6P587 224 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 IGFN1Q86VF2 1251 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 SLCO4A1Q96BD0 722 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 PLEKHF2Q9H8W4 249 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 MOKQ9UQ07 419 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 A0A1W2PPL8 197 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 H3BN98 237 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 SOCS2O14508 198 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 ABCD4O14678 606 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 NAAAQ02083 359 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 AQP6Q13520 282 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 SGCAQ16586 387 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 LEG1Q6P5S2 330 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 SLC22A25Q6T423 547 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 RBM4BQ9BQ04 359 aaKnown RBP9.33□□□□□ -0.92
UBR4-208ENST00000459947 RBM4Q9BWF3 364 aaKnown RBP9.33□□□□□ -0.92
UBR4-208ENST00000459947 POLE4Q9NR33 117 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 VNN3Q9NY84 501 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 GPR160Q9UJ42 338 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 POLR1DQ9Y2S0 133 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 U3KQV3 271 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 SERPINA5P05154 406 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 ZNF23P17027 643 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 FOXG1P55316 489 aaPredicted RBP9.33□□□□□ -0.92
UBR4-208ENST00000459947 ECH1Q13011 328 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 SNTB1Q13884 538 aaKnown RBP9.33□□□□□ -0.92
UBR4-208ENST00000459947 KEAP1Q14145 624 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 THSD4Q6ZMP0 1018 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 MDP1Q86V88 176 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 UBTD1Q9HAC8 227 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 UGT2A1Q9Y4X1 527 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 ATP23Q9Y6H3 246 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 PTPN13Q12923 2485 aa9.33□□□□□ -0.92
UBR4-208ENST00000459947 A0A096LPE4 126 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 A0A1W2PPZ6 126 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 BHLHE40O14503 412 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 PCSK6P29122 969 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 RAD23AP54725 363 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 RAB1AP62820 205 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 LCN1P1Q5VSP4 162 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 AKAP1Q92667 903 aaKnown RBP eCLIP9.32□□□□□ -0.92
UBR4-208ENST00000459947 FOXC2Q99958 501 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 C9orf16Q9BUW7 83 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 FN3KQ9H479 309 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 SEC61A2Q9H9S3 476 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 CMC2Q9NRP2 79 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 KRT84Q9NSB2 600 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 NPAP1Q9NZP6 1156 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 EIF3KQ9UBQ5 218 aaKnown RBP9.32□□□□□ -0.92
UBR4-208ENST00000459947 ADAM18Q9Y3Q7 739 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 USP9YO00507 2555 aaPredicted RBP9.32□□□□□ -0.92
UBR4-208ENST00000459947 SNAP29O95721 258 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 IDH3GP51553 393 aaPredicted RBP9.32□□□□□ -0.92
UBR4-208ENST00000459947 SELENOVP59797 346 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 LSM11P83369 360 aaKnown RBP eCLIP9.32□□□□□ -0.923e-16■■□□□ 14.3
UBR4-208ENST00000459947 MYBPC1Q00872 1141 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 ETFDHQ16134 617 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 ZSCAN26Q16670 478 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 ZBTB46Q86UZ6 589 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 RASD2Q96D21 266 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 TRMT61AQ96FX7 289 aaKnown RBP9.32□□□□□ -0.92
UBR4-208ENST00000459947 BCL2L14Q9BZR8 327 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 IGHV1-18A0A0C4DH31 117 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 PAX1P15863 534 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 RGS6P49758 472 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 GDI2P50395 445 aaKnown RBP9.32□□□□□ -0.92
UBR4-208ENST00000459947 FXYD6P3P58550 94 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 KPNB1Q14974 876 aaKnown RBP9.32□□□□□ -0.92
UBR4-208ENST00000459947 ALKBH2Q6NS38 261 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 CCL19Q99731 98 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 GPA33Q99795 319 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 ELOVL3Q9HB03 270 aa9.32□□□□□ -0.92
UBR4-208ENST00000459947 SLC16A7O60669 478 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 ERCC1P07992 297 aaPredicted RBP9.31□□□□□ -0.92
UBR4-208ENST00000459947 ZNF823P16415 610 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 APOBEC3AP31941 199 aaPredicted RBP9.31□□□□□ -0.92
UBR4-208ENST00000459947 RUNX1T1Q06455 604 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 SLC35D3Q5M8T2 416 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 MEX3DQ86XN8 651 aaKnown RBP9.31□□□□□ -0.92
UBR4-208ENST00000459947 SKA3Q8IX90 412 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 NPEPL1Q8NDH3 523 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 NSMAFQ92636 917 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 SP140LQ9H930 580 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 USE1Q9NZ43 259 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 B9D1Q9UPM9 204 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 PMF1-BGLAPU3KQ54 211 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 ANKHD1Q8IWZ3 2542 aaKnown RBP9.31□□□□□ -0.92
UBR4-208ENST00000459947 SIAH2O43255 324 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 SMPD2O60906 423 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 ATE1O95260 518 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 CECR9P0C854 216 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 EVX1P49640 407 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 CRISP1P54107 249 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 DTX2Q86UW9 622 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 OR52E2Q8NGJ4 325 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 OR2AJ1Q8NGZ0 328 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 ITFG2Q969R8 447 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 HDHD2Q9H0R4 259 aa9.31□□□□□ -0.92
UBR4-208ENST00000459947 SYT4Q9H2B2 425 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms