RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 PRR18Q8N4B5 295 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 ACBD4Q8NC06 268 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 OR5D18Q8NGL1 313 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 PTPMT1Q8WUK0 201 aaPredicted RBP6.71□□□□□ -1.34
SYNE1-213ENST00000448038 TAAR8Q969N4 342 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 CLDN23Q96B33 292 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 SLAMF6Q96DU3 332 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 ZC3HAV1LQ96H79 300 aaKnown RBP6.71□□□□□ -1.34
SYNE1-213ENST00000448038 RASL10BQ96S79 203 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 RAB33BQ9H082 229 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 METTL9Q9H1A3 318 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 TRBV5-3A0A0A0MS03 114 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 TRDV1A0A1B0GX56 115 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 OR2AT4A6NND4 320 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 LINC01387J3KSC0 135 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 LYRM1O43325 122 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 DNAJB6O75190 326 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 RAB40ALP0C0E4 278 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 MSL3P1P0C860 447 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 JUNBP17275 347 aaPredicted RBP6.71□□□□□ -1.34
SYNE1-213ENST00000448038 AKR1C4P17516 323 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 MTNR1BP49286 362 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 MEOX1P50221 254 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 SLC37A1P57057 533 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 OR6V1Q8N148 313 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 RAB40AQ8WXH6 277 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 CPNE4Q96A23 557 aaPredicted RBP6.71□□□□□ -1.34
SYNE1-213ENST00000448038 THAP7Q9BT49 309 aaPredicted RBP6.71□□□□□ -1.34
SYNE1-213ENST00000448038 C1QTNF6Q9BXI9 259 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 ZFP64Q9NPA5 681 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 C20orf141Q9NUB4 165 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 SLC5A6Q9Y289 635 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 KANTRA0A1W2PQU2 76 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 PMS2P1A4D2B8 440 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 PRH1P02810 166 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 TP53P04637 393 aaPredicted RBP6.71□□□□□ -1.34
SYNE1-213ENST00000448038 SFTPBP07988 381 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 HTR2CP28335 458 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 MRPS10P82664 201 aaKnown RBP6.71□□□□□ -1.34
SYNE1-213ENST00000448038 BEND4Q6ZU67 534 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 OR6Q1Q8NGQ2 317 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 DUSP21Q9H596 190 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 IL20Q9NYY1 176 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 CES1P1Q9UKY3 287 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 PROCRQ9UNN8 238 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 TIMM10BQ9Y5J6 103 aa6.71□□□□□ -1.34
SYNE1-213ENST00000448038 A0A096LPE4 126 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 A0A1W2PPZ6 126 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF736B4DX44 427 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 B4DXG7 233 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 B4E171 279 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 DPM1O60762 260 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 CRYABP02511 175 aaKnown RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 TSPAN7P41732 249 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 EFNA3P52797 238 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 EIF5AP63241 154 aaKnown RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 RIPPLY1Q0D2K3 151 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 PLEKHN1Q494U1 663 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 OTPQ5XKR4 325 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 RAB12Q6IQ22 244 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 PGAP1Q75T13 922 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 GALNT11Q8NCW6 608 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 KCTD12Q96CX2 325 aaKnown RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 MOV10Q9HCE1 1003 aaKnown RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 FBXO8Q9NRD0 319 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 TMEFF2Q9UIK5 374 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 SIGLEC7Q9Y286 467 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF175Q9Y473 711 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 A8MV72 311 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 UPK1BO75841 260 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 GP1BAP07359 652 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 YES1P07947 543 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 ALDH3B2P48448 385 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 FXYD4P59646 89 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 GPR176Q14439 515 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 UBE2UQ5VVX9 321 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 TIGD3Q6B0B8 471 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 SFXN4Q6P4A7 337 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 SLC23A3Q6PIS1 610 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF687Q8N1G0 1237 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 PIAS4Q8N2W9 510 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 CLDN22Q8N7P3 220 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 SMAP2Q8WU79 429 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 PHYHIPQ92561 330 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 CDCA4Q9BXL8 241 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 WDR54Q9H977 334 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 PCDHGA1Q9Y5H4 931 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 ZNF254O75437 659 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 OR7C1O76099 320 aaPredicted RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 IGLV3-19P01714 112 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 CLN3Q13286 438 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 FZD5Q13467 585 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 TBRG1Q3YBR2 411 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 LRRC37A5PQ49AS3 106 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 SARGQ9BW04 601 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 ENY2Q9NPA8 101 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 OR14J1Q9UGF5 321 aa6.7□□□□□ -1.34
SYNE1-213ENST00000448038 MRPS28Q9Y2Q9 187 aaKnown RBP6.7□□□□□ -1.34
SYNE1-213ENST00000448038 UBE2J1Q9Y385 318 aaPredicted RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms