RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 CHRNA10Q9GZZ6 450 aa8.21□□□□□ -1.1
LIG4-202ENST00000405925 TXNL4BQ9NX01 149 aaKnown RBP8.21□□□□□ -1.1
LIG4-202ENST00000405925 OR52A1Q9UKL2 312 aa8.21□□□□□ -1.1
LIG4-202ENST00000405925 TRGV8A0A0C4DH27 118 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 C19orf67A6NJJ6 358 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 NKX2-8O15522 239 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 LAP3P28838 519 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 IDH3GP51553 393 aaPredicted RBP8.2□□□□□ -1.1
LIG4-202ENST00000405925 SKP2Q13309 424 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 GALEQ14376 348 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 Q499Y3 187 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 SOWAHCQ53LP3 525 aaPredicted RBP8.2□□□□□ -1.1
LIG4-202ENST00000405925 SPIN3Q5JUX0 258 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 GCNT2Q8N0V5 402 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 OR5D18Q8NGL1 313 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 OR8D4Q8NGM9 314 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 LRFN5Q96NI6 719 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 NOX4Q9NPH5 578 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 COQ3Q9NZJ6 369 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 B9D1Q9UPM9 204 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 A0A1W2PQD3 144 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 WRBO00258 174 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 SMAD9O15198 467 aaKnown RBP8.2□□□□□ -1.1
LIG4-202ENST00000405925 PRSS23O95084 383 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 IL1AP01583 271 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 BMP4P12644 408 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 B4GALT1P15291 398 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 ALDH3B2P48448 385 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 RAC1P63000 192 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 FUT5Q11128 374 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 CEACAM16Q2WEN9 425 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 FAM131CQ96AQ9 280 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 SLAMF6Q96DU3 332 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 ZC3HAV1LQ96H79 300 aaKnown RBP8.2□□□□□ -1.1
LIG4-202ENST00000405925 ACTR6Q9GZN1 396 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 MEPEQ9NQ76 525 aaPredicted RBP8.2□□□□□ -1.1
LIG4-202ENST00000405925 GLS2Q9UI32 602 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 DUSP13Q9UII6 198 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 FBXL2Q9UKC9 423 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 TRAV6A0A075B6T7 132 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 WBP4O75554 376 aaKnown RBP8.2□□□□□ -1.1
LIG4-202ENST00000405925 CRYABP02511 175 aaKnown RBP8.2□□□□□ -1.1
LIG4-202ENST00000405925 LIPCP11150 499 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 ARSBP15848 533 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 ZNF136P52737 540 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 INSM1Q01101 510 aaPredicted RBP8.2□□□□□ -1.1
LIG4-202ENST00000405925 FMODQ06828 376 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 SNTB2Q13425 540 aaKnown RBP8.2□□□□□ -1.1
LIG4-202ENST00000405925 C12orf73Q69YU5 71 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 MOB3CQ70IA8 216 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 PHC2Q8IXK0 858 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 ZBTB44Q8NCP5 570 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 IL17RDQ8NFM7 739 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 OR10D3Q8NH80 312 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 OBP2BQ9NPH6 170 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 SCP2D1Q9UJQ7 156 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 ROS1P08922 2347 aa8.2□□□□□ -1.1
LIG4-202ENST00000405925 ARPC3O15145 178 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 DBHP09172 617 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 SOX8P57073 446 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 HERV-K104P61576 105 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 ZMAT1Q5H9K5 638 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 PXKQ7Z7A4 578 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 ATG4DQ86TL0 474 aaPredicted RBP8.19□□□□□ -1.1
LIG4-202ENST00000405925 LSMEM1Q8N8F7 131 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 BHLHE23Q8NDY6 225 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 LIN37Q96GY3 246 aaPredicted RBP8.19□□□□□ -1.1
LIG4-202ENST00000405925 CDCA4Q9BXL8 241 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 CHIAQ9BZP6 476 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 TGIF2Q9GZN2 237 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 ARID1AO14497 2285 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 LINC01387J3KSC0 135 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 IRF2P14316 349 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 CNR1P21554 472 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 PPP5CP53041 499 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 SMCO1Q147U7 214 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 CNN3Q15417 329 aaKnown RBP8.19□□□□□ -1.1
LIG4-202ENST00000405925 OLFML2AQ68BL7 652 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 MTFR2Q6P444 385 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 GFRALQ6UXV0 394 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 ZNF517Q6ZMY9 492 aaPredicted RBP8.19□□□□□ -1.1
LIG4-202ENST00000405925 INTS12Q96CB8 462 aaKnown RBP8.19□□□□□ -1.1
LIG4-202ENST00000405925 CRLF2Q9HC73 371 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 FOXJ2Q9P0K8 574 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 ZNF639Q9UID6 485 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 B3GNT3Q9Y2A9 372 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 DOCK9Q9BZ29 2069 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 PCNX2A6NKB5 2137 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 GCM2O75603 506 aaPredicted RBP8.19□□□□□ -1.1
LIG4-202ENST00000405925 GABARAPO95166 117 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 AMY2BP19961 511 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 CDAP32320 146 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 MAP2K3P46734 347 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 MLF1P58340 268 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 FXYD6P3P58550 94 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 CDK5Q00535 292 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 COL19A1Q14993 1142 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 INPP5JQ15735 1006 aaPredicted RBP8.19□□□□□ -1.1
LIG4-202ENST00000405925 CDNFQ49AH0 187 aa8.19□□□□□ -1.1
LIG4-202ENST00000405925 ZNF565Q8N9K5 539 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms