RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 OR6C68A6NDL8 312 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 E9PI62 339 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 J3QLW9 94 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 DNPH1O43598 174 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 PLPP2O43688 288 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 WISP1O95388 367 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 TFP02787 698 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 OR2T7P0C7T2 308 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 ASAH2BP0C7U1 165 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 ZNF19P17023 458 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 SPI1P17947 270 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 CXCR1P25024 350 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 DIO1P49895 249 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 CAV3P56539 151 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 CLDN18P56856 261 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 OR12D2P58182 307 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 FOXF1Q12946 379 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 KRR1Q13601 381 aaKnown RBP9.09□□□□□ -0.95
VPS53-202ENST00000389040 TRAM1Q15629 374 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 TOMM34Q15785 309 aaPredicted RBP9.09□□□□□ -0.95
VPS53-202ENST00000389040 EIF2S3LQ2VIR3 472 aaKnown RBP9.09□□□□□ -0.95
VPS53-202ENST00000389040 ALG10Q5BKT4 473 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 SLC35D3Q5M8T2 416 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 ARL9Q6T311 187 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 VASH1Q7L8A9 365 aaPredicted RBP9.09□□□□□ -0.95
VPS53-202ENST00000389040 ADGRE4PQ86SQ3 457 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 OR51L1Q8NGJ5 315 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 OR2T27Q8NH04 317 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 POC1BQ8TC44 478 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 DDIT4LQ96D03 193 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 KTI12Q96EK9 354 aaPredicted RBP9.09□□□□□ -0.95
VPS53-202ENST00000389040 ZFP3Q96NJ6 502 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 KLHDC3Q9BQ90 382 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 NMNAT2Q9BZQ4 307 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 C14orf119Q9NWQ9 140 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 HDGFL3Q9Y3E1 203 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 ZNF175Q9Y473 711 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 PRRC2CQ9Y520 2896 aaKnown RBP9.09□□□□□ -0.95
VPS53-202ENST00000389040 SHISA3A0PJX4 238 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 C17orf51A8MQB3 221 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 GMFGO60234 142 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 NCR1O76036 304 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 WISP2O76076 250 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 TPOP07202 933 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 APEHP13798 732 aaKnown RBP9.09□□□□□ -0.95
VPS53-202ENST00000389040 AGAP20933 346 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 UQCRC1P31930 480 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 TIMP3P35625 211 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 NAA10P41227 235 aaPredicted RBP9.09□□□□□ -0.95
VPS53-202ENST00000389040 ACTA2P62736 377 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 ACTG2P63267 376 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 HSF1Q00613 529 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 ZNF79Q15937 498 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 EMC4Q5J8M3 183 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 NSUN5P2Q63ZY6 315 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 SSX6Q7RTT6 188 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 CD163Q86VB7 1156 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 ADGRG3Q86Y34 549 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 SLC35F2Q8IXU6 374 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 OR8H2Q8N162 312 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 RFLNBQ8N5W9 214 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 LRRC75AQ8NAA5 344 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 STK35Q8TDR2 534 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 HTRA1Q92743 480 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 KLHL15Q96M94 604 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 ATF6BQ99941 703 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 POTEKPQ9BYX7 375 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 SRRQ9GZT4 340 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 OSGIN2Q9Y236 505 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 SLC5A6Q9Y289 635 aa9.09□□□□□ -0.95
VPS53-202ENST00000389040 A8MVM7 634 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 H3BML4 177 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 DVL2O14641 736 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 IMPA2O14732 288 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 SERPINI2O75830 405 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 CD14P08571 375 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 FCGR2AP12318 317 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 GNLYP22749 145 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 CFL1P23528 166 aaKnown RBP9.08□□□□□ -0.96
VPS53-202ENST00000389040 PYCR1P32322 319 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 MTNR1BP49286 362 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 HCCSP53701 268 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 RAC3P60763 192 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 CSNK2A1P68400 391 aaPredicted RBP9.08□□□□□ -0.96
VPS53-202ENST00000389040 LTBQ06643 244 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 SLC3A1Q07837 685 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 MRPL49Q13405 166 aaKnown RBP9.08□□□□□ -0.96
VPS53-202ENST00000389040 ZMAT1Q5H9K5 638 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 DMKNQ6E0U4 476 aaPredicted RBP9.08□□□□□ -0.96
VPS53-202ENST00000389040 LEG1Q6P5S2 330 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 FAM131AQ6UXB0 335 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 FAM122BQ7Z309 247 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 NANOGNBQ7Z5D8 188 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 JAZF1Q86VZ6 243 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 SYS1Q8N2H4 156 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 OR6K6Q8NGW6 343 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 OR5J2Q8NH18 312 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 OR6S1Q8NH40 331 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 PRR7Q8TB68 274 aa9.08□□□□□ -0.96
VPS53-202ENST00000389040 ZNRF4Q8WWF5 429 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms